Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4998g00002 ATGAGGAAGAAGCTTGATACCCGTTTCCCTGCCGCTCGGATAAAGAAGATAATGCAAGCAGACGAGGATGTTGGAAAGATAGCACTGGCCGTGCCTGTTTTAGTTTCTAAAGCTCTAGAGCTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTCAGCAGGGTTCCTGACTACAGCCATGGCCATGGCCATAATGAGGCTGGTGCTGATGATCGGGCTATTCCAAAAAGAAGGAAAGCTGCTGGTGATGATTTTAATGACAGTGATGAGGAGGCTAAGAGGAGCAAGATGCATGAGTTGAGCCACACTGGTAGTACCGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGTCGAGGTTCTCGAACTGTAGTAAGAGAGACATATCATCAAGAAGCTGAATCTGAGCCTTGCACTTCTGTTCCACATGGCAGCCAACATAATGCACATACAAATGTGGCAATACATAATAGTACAGAGTCAAAGGAATTATCAAAGGAAAATATTGCAATTCCTGTTGAAAGCTCTGACTCACTCCCTAATATTGATCTGAATGCCAATATGAACGAAAATGAGGATAAAAAGGCTAGCTCAGTAGATAATGCTTCATTGTCTGAACCTCCAACAGAGAGCAAGAATGAAGAAATTCCGATTCTGGGGTGGCCCCTTTCTGATGTGGACAAGATGGCCATTGACACGATGCAGCTAGCTCACCTCAGCAGGCGAGAAGAGGATGAGGAAGATTATGATGAGGAAGGATAA 861 0.4413 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYSHGHGHNEAGADDRAIPKRRKAAGDDFNDSDEEAKRSKMHELSHTGSTGRGRGRGRGRGRGRGSRTVVRETYHQEAESEPCTSVPHGSQHNAHTNVAIHNSTESKELSKENIAIPVESSDSLPNIDLNANMNENEDKKASSVDNASLSEPPTESKNEEIPILGWPLSDVDKMAIDTMQLAHLSRREEDEEDYDEEG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4998g00002 286 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 120 - -
Gabi4998g00002 286 MobiDBLite consensus disorder prediction 91 181 - -
Gabi4998g00002 286 MobiDBLite consensus disorder prediction 91 137 - -
Gabi4998g00002 286 FunFam dr1-associated corepressor homolog 1 86 - -
Gabi4998g00002 286 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Gabi4998g00002 286 MobiDBLite consensus disorder prediction 225 251 - -
Gabi4998g00002 286 SUPERFAMILY Histone-fold 4 98 IPR009072 GO:0046982
Gabi4998g00002 286 MobiDBLite consensus disorder prediction 167 181 - -
Gabi4998g00002 286 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4998g00002 Gabi-Chr4998 19186 23375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4998g00002 1 275 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.169 1.84e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gabi4998g00002 CBFD_NFYB_HMF 2.1e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4998g00002 K21752 - gmx:100814712 410.994