Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4992g00014 ATGCAAAAGCGCATGATAGACTTAATCCTTGGTCTAGGAATAACCAAATTGGTCATGGGATTTTCATTCATGAAGCCCTCCTTGAAATCAAAAGGTGTCATTAGCGGATTGTTCTATGTTCATCAGCACAAGCCTGCCTCCTGTGAATTGTTCATAATCTGTGGAGGGAAGCAAGTTTTTCTCAGGGGAAAAAATGATGAGAAAACCATGGAGGACGATCATGGAATGATCGTTGCCAAAACAAGAGATAAGATAACTTTTAAAGATTGGCTAGACAAAATGTTCAATGACAAAACCAATGATTCCTTAGAAGATAGAAGTGCATCATCTTCCTCAACAAATTTAGAGTCCTCTGTGACCCCAAACCAATGGGAATTTTATCTCCAAGAAATTGAGAATTATTATCAAGAATTGCTATCTTTAAATTTGGAAGAAGGAAGCAGCGGGCAAGATAATGAAGCCTTCCAGATTAATCCAATTGAGCCAGATTTCACTGAACGGAACAATTCTAATATGAGTGATGCAGAAAAAATTGAGGACCTAAAAACTAGACTGAATGAAGCCCACGAGACCATCCAATTGAAGAGGAAAGAAGCCAAGGATAGCATGGAGAGACATACAAAAGCTGAATGGGCAATTTGTTTATGCAACAGCCGGGTGGAAGAATTAGAAAGTCGAAGAAAGGAAGAAGTGAGTGCAAGGGAAGAGCTAAAGAAGGAGTTGGAGGCGGAGAAAGAAGAGATAGAGGAGATGAGAGTGGATGTTGAAGAGAGGAAGAGGAGGCTGAGTTCATTAGGAGAGGTGCAGAGGGAGGTGTCGAACAGGTTTCAGATATCAACAGAGGCAAAGACAAGAGCGGAGAGGGAACTAGAGAAAGCGGTGGGTGAGAGGAGAGAGATGGTGAGGGAGATAGAAGAGTTAAGGAGGCAAAGGGATGTGCTGAATAGAAGGATTGAGTTTTGCAAGCAGAAGGATGCTATTGGAATGGCTGCAAGGCTGAATGAGGAGGAGCCTAGCTGCAATTTCAGGGAGTACACGGAGGAGGAGATAAGGTTGGCCACCGACAACTTCTCACAACGGCTGAGGTTGAAGTCCGTTGGGGATTGGACCAATGTCTACAGAGGACGATTCAATCATTCCACTGTTGCAATCAAGATGCTCCATTCTTTGCCTTCCTTGTCCCACCAAGATTTCATATCTAAGGTGAGGCTTCTTGGTGATATTAGGCAACCTCATGTGGTAGCCATGGTGGGCTTCTGCTCTGAGCCCAAATGCATAGTTTTGGAATACATGCGCAATGGAAGCTTACGAGACATGTTGTTTTCTAGGCGAAGAAACCGGGTCTTACGTTGGCAAGACCGAATACGAATAGCGACAGAAGTTTGCTCGGGCCTGGGCTTTCTTAATGCAGCTAAGTCAAGGCCCGTTGTTCATTGTCATTTGTCCCCATCCAACGTCCTCCTAGACCGCAATCTGGTTGCAAAGATAAAATGTTTTGGGCTTCAAGAGTGCCATGATGAGGGATGTAACGTAGAGTCTGATTTGCGGGCTTTAGGGGTCTTGTTGCTGCAGCTTTTGAGTGGAAGAAATTGGGCCGGGCTCGTTGAGGAGACCATGACACTTGATATGGATACAGAGGCTTTGGTTACCGTTCTTGATGAGATGGCTGGACACTGGCCGTTGGATCTAGCGAAAGAACTTGCGGGCCTAGCTATGAGGTGCTTGTCCATGAAAAGCAATCCCAACTCAGAATTGAGCATTGGAAGAGTATTGGAGGAACTCAATGAAATGAGAAGAAAGGGTGATGAAATAATTGCAAGGGAAGGACGAAAGGTAATCGTTGGTGGATGCATAGATAGAGATGACTCCAACGATGTGCCTAGTATTTTCCTATGCCCTATACTTCAGGAGGTAATGAAAAACCCACACGTGGCGGCAGATGGATTTTCTTATGAGCTGGAAGCAATGGAACAGTGGTTGCAATCAGGGCGTGACACATCACCCATGACAAATTTAAGGCTGAATCACACATTCCTTATCCCTAATCAATCCCTTCGTTCCTTAATTGAGGATTGGCAGAACAACGGATCAGCTAAAGTTGCAAATTAG 2109 0.4438 MQKRMIDLILGLGITKLVMGFSFMKPSLKSKGVISGLFYVHQHKPASCELFIICGGKQVFLRGKNDEKTMEDDHGMIVAKTRDKITFKDWLDKMFNDKTNDSLEDRSASSSSTNLESSVTPNQWEFYLQEIENYYQELLSLNLEEGSSGQDNEAFQINPIEPDFTERNNSNMSDAEKIEDLKTRLNEAHETIQLKRKEAKDSMERHTKAEWAICLCNSRVEELESRRKEEVSAREELKKELEAEKEEIEEMRVDVEERKRRLSSLGEVQREVSNRFQISTEAKTRAERELEKAVGERREMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLNEEEPSCNFREYTEEEIRLATDNFSQRLRLKSVGDWTNVYRGRFNHSTVAIKMLHSLPSLSHQDFISKVRLLGDIRQPHVVAMVGFCSEPKCIVLEYMRNGSLRDMLFSRRRNRVLRWQDRIRIATEVCSGLGFLNAAKSRPVVHCHLSPSNVLLDRNLVAKIKCFGLQECHDEGCNVESDLRALGVLLLQLLSGRNWAGLVEETMTLDMDTEALVTVLDEMAGHWPLDLAKELAGLAMRCLSMKSNPNSELSIGRVLEELNEMRRKGDEIIAREGRKVIVGGCIDRDDSNDVPSIFLCPILQEVMKNPHVAADGFSYELEAMEQWLQSGRDTSPMTNLRLNHTFLIPNQSLRSLIEDWQNNGSAKVAN 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4992g00014 702 Gene3D Phosphorylase Kinase; domain 1 359 431 - -
Gabi4992g00014 702 Coils Coil 178 198 - -
Gabi4992g00014 702 PANTHER OS02G0152300 PROTEIN 2 690 - -
Gabi4992g00014 702 Coils Coil 220 265 - -
Gabi4992g00014 702 CDD RING-Ubox_WDSUB1-like 627 682 - -
Gabi4992g00014 702 Pfam U-box domain 626 694 IPR003613 GO:0004842|GO:0016567
Gabi4992g00014 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 700 IPR013083 -
Gabi4992g00014 702 ProSiteProfiles Protein kinase domain profile. 358 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4992g00014 702 SUPERFAMILY RING/U-box 622 695 - -
Gabi4992g00014 702 SMART Ubox_2 629 692 IPR003613 GO:0004842|GO:0016567
Gabi4992g00014 702 SUPERFAMILY Protein kinase-like (PK-like) 338 578 IPR011009 -
Gabi4992g00014 702 Coils Coil 283 324 - -
Gabi4992g00014 702 Gene3D Transferase(Phosphotransferase) domain 1 432 612 - -
Gabi4992g00014 702 ProSiteProfiles U-box domain profile. 625 699 IPR003613 GO:0004842|GO:0016567
Gabi4992g00014 702 Pfam Protein tyrosine and serine/threonine kinase 367 505 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4992g00014 Gabi-Chr4992 91338 98434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4992g00014 1 702 U-box Gene Family AT5G65500 47.673 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi4992g00014 PK_Tyr_Ser-Thr 4.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4992g00014 - - gmx:100786771 1055.43