Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4992g00013 ATGGATGCAAACCAACCAGAGAAAATCTATGTTGCTGTTGGCAATGATGCACAGGATGGATTTATGACTTTGCATTGGGCTCTCAAGAAATGGAATTCTCATCCAATTTCCATTGTTATTCTCCATGTGACTTGCAATGTTTCCGTGGATTATGTTTATACACCATTTGGGAAACTTCCAGCAAGATCTGTGAATGATGAGAAACTAGAAGTTCTCAGGAAAGATGAGCAAGAGAAAATCAACAAGCTGCTTTCCAAGTTTGTTGCTTTGTGTGGCACGGTGCCAGCAGAAATTCTTGAAGTTGGAAAGTTTGATGAACCTATGCAAAAGCGCATGATAGACTTAATCCTTGGTCTAGGAATAACCAAATTGGTCATGGGATTTTCATTCATGAAGCCCTCCTTGAAATCAAAAGGTGTCATTAGCGGATTGTTCTATGTTCATCAGCACAAGCCTGCCTCCTGTGAATTGTTCATAATCTGTGGAGGGAAGCAAGTTTTTCTCAGGGGAAAAAATGATGAGAAAACCATGGAGGACGATCATGGAATGATCGTTGCCAAAACAAGAGATAAGATAACTTTTAAAGATTGGCTAGACAAAATGTTCAATGACAAAACCAATGATTCCTTAGAAGATAGAAGTGCATCATCTTCCTCAACAAATTTAGAGTCCTCTGTGACCCCAAACCAATGGGAATTTTATCTCCAAGAAATTGAGAATTATTATCAAGAATTGCTATCTTTAAATTTGGAAGAAGGAAGCAGCGGGCAAGATAATGAAGCCTTCCAGATTAATCCAATTGAGCCAGATTTCACTGAACGGAACAATTCTAATATGAGTGATGCAGAAAAAATTGAGGACCTAAAAACTAGACTGAATGAAGCCCACGAGACCATCCAATTGAAGAGGAAAGAAGCCAAGGATAGCATGGAGAGACATACAAAAGCTGAATGGGCAATTTGTTTATGCAACAGCCGGGTGGAAGAATTAGAAAGTCGAAGAAAGGAAGAAGTGAGTGCAAGGGAAGAGCTAAAGAAGGAGTTGGAGGCGGAGAAAGAAGAGATAGAGGAGATGAGAGTGGATGTTGAAGAGAGGAAGAGGAGGCTGAGTTCATTAGGAGAGGTGCAGAGGGAGGTGTCGAACAGGTTTCAGATATCAACAGAGGCAAAGACAAGAGCGGAGAGGGAACTAGAGAAAGCGGTGGGTGAGAGGAGAGAGATGGTGAGGGAGATAGAAGAGTTAAGGAGGCAAAGGGATGTGCTGAATAGAAGGATTGAGTTTTGCAAGCAGAAGGATGCTATTGGAATGGCTGCAAGGCTGAATGAGGAGGAGCCTAGCTGCAATTTCAGGGAGTACACGGAGGAGGAGATAAGGTTGGCCACCGACAACTTCTCACAACGGCTGAGGTTGAAGTCCGTTGGGGATTGGACCAATGTCTACAGAGGACGATTCAATCATTCCACTGTTGCAATCAAGATGCTCCATTCTTTGCCTTCCTTGTCCCACCAAGATTTCATATCTAAGGTGAGGCTTCTTGGTGATATTAGGCAACCTCATGTGGTAGCCATGGTGGGCTTCTGCTCTGAGCCCAAATGCATAGTTTTGGAATACATGCGCAATGGAAGCTTACGAGACATGTTGTTTTCTAGGCGAAGAAACCGGGTCTTACGTTGGCAAGACCGAATACGAATAGCGACAGAAGTTTGCTCGGGCCTGGGCTTTCTTAATGCAGCTAAGTCAAGGCCCGTTGTTCATTGTCATTTGTCCCCATCCAACGTCCTCCTAGACCGCAATCTGGTTGCAAAGATAAAATGTTTTGGGCTTCAAGAGTGCCATGATGAGGGATGTAACGTAGAGTCTGATTTGCGGGCTTTAGGGGTCTTGTTGCTGCAGCTTTTGAGTGGAAGAAATTGGGCCGGGCTCGTTGAGGAGACCATGACACTTGATATGGATACAGAGGCTTTGGTTACCGTTCTTGATGAGATGGCTGGACACTGGCCGTTGGATCTAGCGAAAGAACTTGCGGGCCTAGCTATGAGGTGCTTGTCCATGAAAAGCAATCCCAACTCAGAATTGAGCATTGGAAGAGTATTGGAGGAACTCAATGAAATGAGAAGAAAGGGTGATGAAATAATTGCAAGGGAAGGACGAAAGGTAATCGTTGGTGGATGCATAGATAGAGATGACTCCAACGATGTGCCTAGTATTTTCCTATGCCCTATACTTCAGGAGGTAATGAAAAACCCACACGTGGCGGCAGATGGATTTTCTTATGAGCTGGAAGCAATGGAACAGTGGTTGCAATCAGGGCGTGACACATCACCCATGACAAATTTAAGGCTGAATCACACATTCCTTATCCCTAATCAATCCCTTCGTTCCTTAATTGAGGATTGGCAGAACAACGGATCAGCTAAAGTTGCAAATTAG 2430 0.4379 MDANQPEKIYVAVGNDAQDGFMTLHWALKKWNSHPISIVILHVTCNVSVDYVYTPFGKLPARSVNDEKLEVLRKDEQEKINKLLSKFVALCGTVPAEILEVGKFDEPMQKRMIDLILGLGITKLVMGFSFMKPSLKSKGVISGLFYVHQHKPASCELFIICGGKQVFLRGKNDEKTMEDDHGMIVAKTRDKITFKDWLDKMFNDKTNDSLEDRSASSSSTNLESSVTPNQWEFYLQEIENYYQELLSLNLEEGSSGQDNEAFQINPIEPDFTERNNSNMSDAEKIEDLKTRLNEAHETIQLKRKEAKDSMERHTKAEWAICLCNSRVEELESRRKEEVSAREELKKELEAEKEEIEEMRVDVEERKRRLSSLGEVQREVSNRFQISTEAKTRAERELEKAVGERREMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLNEEEPSCNFREYTEEEIRLATDNFSQRLRLKSVGDWTNVYRGRFNHSTVAIKMLHSLPSLSHQDFISKVRLLGDIRQPHVVAMVGFCSEPKCIVLEYMRNGSLRDMLFSRRRNRVLRWQDRIRIATEVCSGLGFLNAAKSRPVVHCHLSPSNVLLDRNLVAKIKCFGLQECHDEGCNVESDLRALGVLLLQLLSGRNWAGLVEETMTLDMDTEALVTVLDEMAGHWPLDLAKELAGLAMRCLSMKSNPNSELSIGRVLEELNEMRRKGDEIIAREGRKVIVGGCIDRDDSNDVPSIFLCPILQEVMKNPHVAADGFSYELEAMEQWLQSGRDTSPMTNLRLNHTFLIPNQSLRSLIEDWQNNGSAKVAN 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4992g00013 809 Coils Coil 327 372 - -
Gabi4992g00013 809 Gene3D Phosphorylase Kinase; domain 1 466 538 - -
Gabi4992g00013 809 Gene3D Transferase(Phosphotransferase) domain 1 539 719 - -
Gabi4992g00013 809 ProSiteProfiles U-box domain profile. 732 806 IPR003613 GO:0004842|GO:0016567
Gabi4992g00013 809 Coils Coil 285 305 - -
Gabi4992g00013 809 Pfam Protein tyrosine and serine/threonine kinase 474 612 IPR001245 GO:0004672|GO:0006468
Gabi4992g00013 809 SUPERFAMILY RING/U-box 729 802 - -
Gabi4992g00013 809 Pfam U-box domain 733 801 IPR003613 GO:0004842|GO:0016567
Gabi4992g00013 809 PANTHER OS02G0152300 PROTEIN 9 797 - -
Gabi4992g00013 809 CDD RING-Ubox_WDSUB1-like 734 789 - -
Gabi4992g00013 809 ProSiteProfiles Protein kinase domain profile. 465 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4992g00013 809 Coils Coil 390 431 - -
Gabi4992g00013 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 731 807 IPR013083 -
Gabi4992g00013 809 SMART Ubox_2 736 799 IPR003613 GO:0004842|GO:0016567
Gabi4992g00013 809 SUPERFAMILY Protein kinase-like (PK-like) 446 685 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4992g00013 Gabi-Chr4992 91330 98773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4992g00013 7 809 U-box Gene Family AT5G65500 49.631 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi4992g00013 PK_Tyr_Ser-Thr 5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4992g00013 - - gmx:100786771 1230.31