Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4992g00004 ATGGCTCTTCCTGGTTCCCTGCAGCTGTCCCATGGATTGGGACTTTGCAGGAACCTGAGCTGCAATAAACATTCGAGGGTAACGGGAAGAGGCAAGTTACATTTATTGAAAGCAGGTCCTTCATATCCTATTTTGGGCTGCAGGGGATTTCAACTTCTTCGTCATATAAACAAGCCAACTCATACATTGTCTTGCAAATCCCGCTCTTTTAAGTGCCATTGTTTTTTAGTACCAGGCCCGCCAAGTGAGCTGCCTGCTGTTAAGGTGGTTGCTACGGCACTGGCAAGGTCTTGTAATGTTTTACAAAGTAGTCCTGCCATTGTAAAGTTGATTCCTGCAGTTGGCATTATCATTTTTGCAGTATGGGGTGTTGGTCCATTAATGTTTCAGACAAGGAAACTGTTTTTTCAAAGGAGTGATAATAGTTGGAAAAAAAGTACCACTCATTATGTAGTAACTTCTTACCTTCAGCCATTGCTGTTATGGACTGGAGCAATGCTTATTTGCAGAGCATTGGAGCCGGTAATTCTACCCTCAGCAACTGGCCAGGTTGTTAAGGAACGGCTTTTGAATTTCATAAGATCATTGTCAACTGTACTAGCTTTCACCTATTGTTTATCAAGTGTAATTCAACAAGCACAGAAATTCTTAGCAGAGAGCGCTGATGCAAATGAGACAAGAAATATGGGATTCCAATTTGCGGGCAAAGCTGTTTATTCTGCAGTATGGATTGCTGCCGTTTCATTGTTTATGGAATTGCTGGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGTTGACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGCGCCATGATTCATGCAACTCGGCCTTTTGTGGTTAATGAATGGATTCAAACCAATATTGAAGGATATGAGGTTTCCGGTACTGTGGAGCATGTTGGCTGGTGGTCACCAACAATTATAAGAGGTGAAGATCGTGAAGCTGTACACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTCAGTCAAAAAACACATTGGCGAATCAAAACTCACCTAGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATTGTTGCTGACATGCGGAAAGTATTAGCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCACAGGAGAGTGTTTTTGGACAATATCAATCCTGAAAATCAGGCTCTTTTGATTCTGGTGTCTTGTTTTGTTAAGACCTCACATTTTGAAGAATATTTGTGTGTTAAGGAAACTATACTATTGGATCTTCTTAGAGTTATCGGCCATCACCGGGCCCGACTTGCAACACCAGTCCGTACCCTGCAGAAAATATACAGTGATGCTGACTTGGATAACATACCATATGCAGATTCCACATTTAGTGGTGCTGGAACAGTATCTAAGCGTCCATTATTAATGATTGAATCGCCTTACAAGATCAATGCAGATGATAAGATGAAAAGTCGATCAGCACGACCAGGTGTTGATCAAGATAACAAGACAACTGCGCGAACCAAACTCGACACCAAGACAGATGCAAAGGTTGAACCAATGGGAGGACCAGACACCAAGGTTAGAGGAACTCAAGATGACCATGAGGTGGACACCAAAGTTGTGACATCTAATTCTGATGCAAATGGAAACTCTAAGACTGTTATAACACCCAAACCCGATCCTGAAGTGGGTGAAAACAAGCCACAATCAGATTCAAACAAGGCAAATGTGGAGGTGCCAGAAATGTCTTCTTCCAACTCCAAAGAAACTGGTTTGGTGGTAGATAATTCAACCCAGAAGGACATCAATGTCAAACAATCCAAGGGTCAGACCATTAAAAACATTAAGCCGAACATTGACAGTGTAGTTTCCTCCTCATCAACTAGCAATGCTGACAATGCTGGTGGACTTTCTATGAATATGCCAACAAAACAGCAAGGGGAAAGGAAACCTGCTGCACAGCCTCATGCATCTAGACCTGTTCTTGAAGATAATATAGTTCTGGGTGTTGCATTGGACGGATCAAAGAGGACCCTTCCCATTGATGAGGAGGTTGACACTGTGACATCTCGAGAGGCAAAAGAAATGGCTGCATGCCAGGGTGGAAATGGATCTCCAAATGGTGCAGATGTGAATGACAAGTAA 2175 0.4239 MALPGSLQLSHGLGLCRNLSCNKHSRVTGRGKLHLLKAGPSYPILGCRGFQLLRHINKPTHTLSCKSRSFKCHCFLVPGPPSELPAVKVVATALARSCNVLQSSPAIVKLIPAVGIIIFAVWGVGPLMFQTRKLFFQRSDNSWKKSTTHYVVTSYLQPLLLWTGAMLICRALEPVILPSATGQVVKERLLNFIRSLSTVLAFTYCLSSVIQQAQKFLAESADANETRNMGFQFAGKAVYSAVWIAAVSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTNIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLCVKETILLDLLRVIGHHRARLATPVRTLQKIYSDADLDNIPYADSTFSGAGTVSKRPLLMIESPYKINADDKMKSRSARPGVDQDNKTTARTKLDTKTDAKVEPMGGPDTKVRGTQDDHEVDTKVVTSNSDANGNSKTVITPKPDPEVGENKPQSDSNKANVEVPEMSSSNSKETGLVVDNSTQKDINVKQSKGQTIKNIKPNIDSVVSSSSTSNADNAGGLSMNMPTKQQGERKPAAQPHASRPVLEDNIVLGVALDGSKRTLPIDEEVDTVTSREAKEMAACQGGNGSPNGADVNDK 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4992g00004 724 Gene3D - 189 293 - -
Gabi4992g00004 724 Pfam Mechanosensitive ion channel 236 442 IPR006685 GO:0016020|GO:0055085
Gabi4992g00004 724 MobiDBLite consensus disorder prediction 495 550 - -
Gabi4992g00004 724 SUPERFAMILY Sm-like ribonucleoproteins 279 349 IPR010920 -
Gabi4992g00004 724 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 708 IPR045042 -
Gabi4992g00004 724 MobiDBLite consensus disorder prediction 551 565 - -
Gabi4992g00004 724 MobiDBLite consensus disorder prediction 692 724 - -
Gabi4992g00004 724 MobiDBLite consensus disorder prediction 576 657 - -
Gabi4992g00004 724 Gene3D - 295 350 IPR023408 -
Gabi4992g00004 724 MobiDBLite consensus disorder prediction 495 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4992g00004 Gabi-Chr4992 25798 32872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4992g00004 9 724 Mechanosensitive Ion Channel Family AT5G10490 54.959 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4992g00004 K22047 - gmx:100789444 1182.93