Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4983g00008 ATGGCCGCAGAAATTTGTGGCAGGTCTCTACTCTTATCCGTTAAAACCCAAACATTCCTCCATGCTCAACGAACCAGAGCAACAACGAGAACAAGCACTACGAGATTCCACTCATCCAAATCTCCTCTTTATTCTCGCTCTTCAAATGCCTCCACCTTTCGCCACGGCGGCGCCTCCGTCTTCTGCCGTGTTGCTAGCACCGAGACACTCTCCGACTTCGAATCCGCCGTCAAAGCTGGCAAGGATCGTCTATCTAAGGTGCCGGTGTCTAATATAAGGAACTTTAGCATCATTGCTCATATTGACCATGGGAAATCCACCTTGGCGGATAAGTTGCTTCAGGTCACTGGCACTGTGCACCAGCGAGACATGAAGGATCAGTTCCTCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTGCAGGCAGCTCGAATGCGTTATGTGTCTGAAAATGAACCATATTGCTTAAATCTAATAGATACACCGGGGCATGTCGACTTCTCGTATGAGGTTTCTCGATCACTCGCAGCATGTGAGGGTGCTCTCCTTGTAGTAGATGCTTCTCAGGGGGTTGAGGCACAAACACTAGCTAATGTTTATTTGGCTATGGAGAACAACCTAGAAGTTATCCCTGTTTTGAACAAAATAGATCTTCCAGGTGCAGAACCAGATCGAGTTATCAAGGAGATTGAAGAGGAAGGAGTAGGCATAATTGATATTCTCAATGCAATTGTTGCAAGAATTCCCCCACCTGCTGATACATCTAAAAGGCCATTGAGGGCTTTAATATTTGATAGTTACTATGATCCATACAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGGACTATAAAGAAAGGTGACAGAGTTTATTTTATGGCTAGTGGGAAGGATTATTTTGCTGATGAAATTGGAGTTTTGTCTCCCAATCAATTACAAGTTGAAGAATTGTATGCTGGTGAGGTGGGCTATCTATCTGCATCTATAAGAACAGTAGCTGATGCTAGAGTGGGTGACACTATTACTCACTATGGAAGAAAGGCAGATAATTCACTCCCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGCCTGTTTCCTGTTGATGCTGACCAATTTCCTGATCTTCGTGATGCACTTGAGAAGCTACAACTCAACGATGCTGCTCTGAAGTTTGAACCTGAGACCTCAAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGTCTTCTCCACATGGAAATAGTTCAGGAGAGACTTGAGAGAGAATACAATCTGAGCCTGATAACTACTGCTCCAAGTGTTGTATACAAAGTGAACTTTGTAAATGGTGATACTGTTGAATGCTCAAATCCATCTTTACTTCCCGAGCCTGGAAAAAGGAAATCAATTGAGGAGCCATTTGTCAAGATTGAGATGCTTACACCAAAGGACTACATTGGTTCGCTTATGGAACTGGGACAAGAGAGAAGAGGGCAGTTCAAAGAAATGAAATTTATAACTGAAAATAGGGCATCGCTCACCTATGAATTACCCCTAGCCGAGATGGTTGGTGATTTCTTTGACCAGTTGAAGTCAAGAAGTAAGGGTTACGCTAGTATGGAGTATAACTTCGTCGGATACAAAGAAAGTGATTTAATTAAACTTGACATACTGATAAACGGTGATTGTGTGGAGCCATTGGCTACAATTGTGCACAAAGATAAGGCATATTCTATTGGAAGGGCTTTGACTTTAAAGTTGAAGGAGCTCATACCGAGGCAAATGTTTAAAGTACCCATTCAAGCATGCATAGGAACAAAAGTGATTGCTAGTGAAGCTTTATCTGCAATAAGGAAGGATGTATTAGCCAAATGCTACGGTGGGGATATTACGAGAAAAAAGAAATTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCAATTGGTAAAGTTGATGTGCCTCAAGAAGCTTTCATGGCGGTTTTGAAACTTGAAAAAGAAGTAATATGA 2019 0.424 MAAEICGRSLLLSVKTQTFLHAQRTRATTRTSTTRFHSSKSPLYSRSSNASTFRHGGASVFCRVASTETLSDFESAVKAGKDRLSKVPVSNIRNFSIIAHIDHGKSTLADKLLQVTGTVHQRDMKDQFLDNMDLERERGITIKLQAARMRYVSENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAMENNLEVIPVLNKIDLPGAEPDRVIKEIEEEGVGIIDILNAIVARIPPPADTSKRPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRVYFMASGKDYFADEIGVLSPNQLQVEELYAGEVGYLSASIRTVADARVGDTITHYGRKADNSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYKVNFVNGDTVECSNPSLLPEPGKRKSIEEPFVKIEMLTPKDYIGSLMELGQERRGQFKEMKFITENRASLTYELPLAEMVGDFFDQLKSRSKGYASMEYNFVGYKESDLIKLDILINGDCVEPLATIVHKDKAYSIGRALTLKLKELIPRQMFKVPIQACIGTKVIASEALSAIRKDVLAKCYGGDITRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVI 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4983g00008 672 CDD EF4_III 365 440 - -
Gabi4983g00008 672 CDD LepA 93 255 - -
Gabi4983g00008 672 PRINTS GTP-binding elongation factor signature 137 145 IPR000795 GO:0003924|GO:0005525
Gabi4983g00008 672 PRINTS GTP-binding elongation factor signature 213 222 IPR000795 GO:0003924|GO:0005525
Gabi4983g00008 672 PRINTS GTP-binding elongation factor signature 177 188 IPR000795 GO:0003924|GO:0005525
Gabi4983g00008 672 PRINTS GTP-binding elongation factor signature 94 107 IPR000795 GO:0003924|GO:0005525
Gabi4983g00008 672 PRINTS GTP-binding elongation factor signature 161 171 IPR000795 GO:0003924|GO:0005525
Gabi4983g00008 672 Pfam Elongation factor Tu domain 2 277 347 IPR004161 GO:0005525
Gabi4983g00008 672 Gene3D - 440 551 - -
Gabi4983g00008 672 Hamap Elongation factor 4 [lepA]. 87 670 IPR006297 GO:0005525
Gabi4983g00008 672 PANTHER TRANSLATION FACTOR GUF1-RELATED 71 667 IPR006297 GO:0005525
Gabi4983g00008 672 Gene3D - 85 261 IPR027417 -
Gabi4983g00008 672 SUPERFAMILY EF-G C-terminal domain-like 364 442 IPR035647 -
Gabi4983g00008 672 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 90 256 IPR000795 GO:0003924|GO:0005525
Gabi4983g00008 672 Coils Coil 662 672 - -
Gabi4983g00008 672 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 130 145 IPR031157 -
Gabi4983g00008 672 NCBIfam translation elongation factor 4 91 667 IPR006297 GO:0005525
Gabi4983g00008 672 Gene3D Elongation Factor G (Translational Gtpase), domain 3 358 439 - -
Gabi4983g00008 672 CDD EF4_II 263 348 - -
Gabi4983g00008 672 SUPERFAMILY EF-G C-terminal domain-like 471 565 IPR035647 -
Gabi4983g00008 672 FunFam Translation factor GUF1, mitochondrial 552 626 - -
Gabi4983g00008 672 FunFam Elongation factor 4 89 257 - -
Gabi4983g00008 672 Pfam Elongation factor Tu GTP binding domain 91 237 IPR000795 GO:0003924|GO:0005525
Gabi4983g00008 672 CDD lepA_C 473 552 IPR035654 -
Gabi4983g00008 672 FunFam Translation factor GUF1, mitochondrial 258 356 - -
Gabi4983g00008 672 Gene3D Translation factors 262 357 - -
Gabi4983g00008 672 Pfam GTP-binding protein LepA C-terminus 560 666 IPR013842 -
Gabi4983g00008 672 FunFam Translation factor GUF1, mitochondrial 358 439 - -
Gabi4983g00008 672 SMART EFG_C_a 470 558 IPR000640 -
Gabi4983g00008 672 SUPERFAMILY Translation proteins 238 359 IPR009000 -
Gabi4983g00008 672 NCBIfam small GTP-binding protein domain 93 235 IPR005225 GO:0005525
Gabi4983g00008 672 Pfam Elongation factor G C-terminus 471 557 IPR000640 -
Gabi4983g00008 672 FunFam Translation factor GUF1, mitochondrial 440 550 - -
Gabi4983g00008 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 273 IPR027417 -
Gabi4983g00008 672 Gene3D - 552 626 IPR038363 -
Gabi4983g00008 672 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4983g00008 Gabi-Chr4983 98159 119812 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4983g00008 92 310 Eukaryotic Initiation Factors Gene Family AT3G22980 33.610 2.20e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4983g00008 K21594 - gmx:100784073 1143.64