Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4982g00001 ATGTTACTATTCTCTAGTACAATGAACAGGGGAATTGAATTTCTTTCTCCAGGTTCTTATCTTCAGAATTCTAATTGGTTGTTCCAGGAAAGTGAGAGAACCAAATGGACGCCAGAAGAGAACAAAAGGTTTGAGAATGCTTTGGCTTTCTATGATAAGGACACTCCAGATCGTTGGATGAAGGTGGCAGCTATGATTCCAGGAAAGACTGTAGGTGATGTGATCAAACAGTACAGGGAACTGGAAGAAGATGTGAGTGTCATTGAATCTGGGCTGATTCCAGTTCCTGGTTACACTACTAGTTCTTTCACGTTGGAGTGGGTTAACAATCAAGGCTTTGATGAGTTCAATCAATTTTATAATGTTGCTGGCAAAAGGGGCACTTCCACTCGGCCATCTGAACAGGAAAGGAAGAAAGGAGTGCCGTGGACTAAAGAGGAGCATAGGCTATTTCTGATGGGTCTGAAGAAGTATGGTAAAGGAGATTGGAGAAACATCTCTCGTAATTTTGTGACCACAAGGACACCAACTCAGGTTGCAAGTCATGCTCAGAAGTATTTCATAAGGCAACTTACTGGAGGGAAGGATAAGAGGAGATCCAGCATCCATGACATCACAATGGTCAATCTCCCAGAAACAAAATCTCCTTCATCAGACAGTAACATACCTCCTTCTCCAAATCAATCACTGAAGGTTTTGAATCCACATCAGAATCAGAAATTGTCTAGCATGGTTAAACAGGAATATGACTTCAAATTTCCAAATGAGGGCATGTCTATGCTTTTTGATTCCACAAATGGAAACATGTTCATGACACCACTGCGTGGGAATTCTTTATATGGATCTAAACCACAGGAGCAATGTTTACTCAGAGGAACTCTCCATGGAAGCCAATTGGGCCCTTATGATACTATTATGCAAATGCAATCGATGCAACATCAGTGA 945 0.4138 MLLFSSTMNRGIEFLSPGSYLQNSNWLFQESERTKWTPEENKRFENALAFYDKDTPDRWMKVAAMIPGKTVGDVIKQYRELEEDVSVIESGLIPVPGYTTSSFTLEWVNNQGFDEFNQFYNVAGKRGTSTRPSEQERKKGVPWTKEEHRLFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLPETKSPSSDSNIPPSPNQSLKVLNPHQNQKLSSMVKQEYDFKFPNEGMSMLFDSTNGNMFMTPLRGNSLYGSKPQEQCLLRGTLHGSQLGPYDTIMQMQSMQHQ 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4982g00001 314 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 30 249 IPR043363 -
Gabi4982g00001 314 FunFam Transcription factor SRM1 28 95 - -
Gabi4982g00001 314 ProSiteProfiles Myb-like domain profile. 135 187 IPR001005 -
Gabi4982g00001 314 SUPERFAMILY Homeodomain-like 136 190 IPR009057 -
Gabi4982g00001 314 ProSiteProfiles SANT domain profile. 143 191 IPR017884 -
Gabi4982g00001 314 Gene3D - 28 95 - -
Gabi4982g00001 314 CDD SANT 142 187 IPR001005 -
Gabi4982g00001 314 Gene3D - 141 191 - -
Gabi4982g00001 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 191 IPR017930 -
Gabi4982g00001 314 Pfam Myb-like DNA-binding domain 33 80 IPR001005 -
Gabi4982g00001 314 Pfam Myb-like DNA-binding domain 142 187 IPR001005 -
Gabi4982g00001 314 MobiDBLite consensus disorder prediction 207 227 - -
Gabi4982g00001 314 ProSiteProfiles Myb-like domain profile. 28 82 IPR001005 -
Gabi4982g00001 314 FunFam transcription factor MYB1R1 141 192 - -
Gabi4982g00001 314 CDD SANT 35 81 IPR001005 -
Gabi4982g00001 314 NCBIfam myb-like DNA-binding domain, SHAQKYF class 138 190 IPR006447 GO:0003677
Gabi4982g00001 314 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Gabi4982g00001 314 SMART sant 32 84 IPR001005 -
Gabi4982g00001 314 SMART sant 139 189 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4982g00001 Gabi-Chr4982 56291 58858 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4982g00001 Myb_DNA-binding 7.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4982g00001 - - qsa:O6P43_026398 498.819