Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4981g00097 ATGGGAATTGAGAGAGGAGGCTTCAAGGGCTTTAGGAGTGGCTGGACTGTGCCGCCGAAGCCATGTGATTCTTGCAAGTTGGCTTCGGCGGCGCTCTTCTGCCGCCCCGATTCAGCGTTTCTCTGCATCGCCTGCGATTCCAAGATTCACTGCGCTAATAAGCTTGCGTCGCGCCACGAGCGCGTGTGGATGTGCGAGGTGTGCGAGCAAGCACCTGCATCTGTCACGTGCAAGGCAGACGCCGCCGCACTCTGCGTCACGTGCGACTCTGATATCCACTCGGCCAACCCTCTCGCTCGCCGCCACGAGCGTGTCCCCGTGGAGCCCTTCTTCGACTCCGCCGAATCCATCGTGAAAGCCTCCTCCGCCGTCGCCTCCTCCTTTAGCTTCATGGCCCCCTCCGACGAAGGAATTGGCTCCGACGGGTTCAACCAAGACGACTCCGAAGAAGCCGCGTGGCTCATTCCCAACCCGAATTTCGGATTCAAGCTAATGGACGCTCCGGATACCAAGTCCAGGGAGATTTTCTTCTCGGAAATGGATCCATTTCTTGATTTCGATTACTCAAACTCCTTCCAGAACAACAACAACAACAACAACAATCATGGTGCCGGAAACGACAGCGTCGTTCCAGTTCAAAACAAACCTGCTCACGTTCTCGCTCCAGCTCCGGTGATGAATCATCACTCGGAGGGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCCTCGTTTAACTACCCATCACAGTCTCTTAGCCAAAGCGTTTCTTCGTCTTCGCATGATGTTGGAGTGGTGCCAGATGGGAACACGGTGTCGGACATGTCGTACCCTTTCGGTCTGAACAGCTCCGATTCGAGTGGGATGGTGTCGGCGGTTAGCGGCCAAGGTGGGACCCAATTGTGCGGCATGGATCGGGAAGCGAGGGTGCTGAGATACAGAGAGAAGAGAAAGAACCGCAAGTTCGAGAAGACCATTCGATACGCTTCGCGAAAGGCTTATGCCGAAACTCGGCCCAGGATCAAAGGCCGGTTCGCCAAACGAACCGAAATTGAGTCAGAGGTGGACCGCCTCTTTAGCCCTTCTGCTGCTGCTGCTGCTGCTGCTTTCCCTGGGTCTTTATTGATGGACCCTCCGTACGGCGTCGTCCCAACGTTTTAG 1164 0.5541 MGIERGGFKGFRSGWTVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESIVKASSAVASSFSFMAPSDEGIGSDGFNQDDSEEAAWLIPNPNFGFKLMDAPDTKSREIFFSEMDPFLDFDYSNSFQNNNNNNNNHGAGNDSVVPVQNKPAHVLAPAPVMNHHSEGCFDIDFCRSKLSSFNYPSQSLSQSVSSSSHDVGVVPDGNTVSDMSYPFGLNSSDSSGMVSAVSGQGGTQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESEVDRLFSPSAAAAAAAFPGSLLMDPPYGVVPTF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4981g00097 387 CDD Bbox1_BBX-like 65 107 - -
Gabi4981g00097 387 CDD Bbox1_BBX-like 21 64 - -
Gabi4981g00097 387 SMART bboxneu5 65 107 IPR000315 GO:0008270
Gabi4981g00097 387 SMART bboxneu5 17 64 IPR000315 GO:0008270
Gabi4981g00097 387 Pfam CCT motif 307 349 IPR010402 GO:0005515
Gabi4981g00097 387 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Gabi4981g00097 387 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Gabi4981g00097 387 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 368 IPR045281 GO:0009909
Gabi4981g00097 387 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Gabi4981g00097 387 ProSiteProfiles CCT domain profile. 307 349 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4981g00097 Gabi-Chr4981 1110258 1111777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4981g00097 1 387 C2C2-CO-like Transcription Factor Family AT5G57660 54.177 1.09e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi4981g00097 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4981g00097 - - gmx:100805693 580.867