Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4981g00096 ATGTTACCTACTTCCCCAGCTAAAATACTAATTGGCCTCTCCTTAGACCCAGATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAATTCTAGCCAATCCAAATGACACCATTGTGGCCGTGCATGTTCTTGCTTCTGAGGATAAGAAGAAGCGTGCCTCAATCAGAAGAAGGCAATCACAACTAAGGCAGGCAAAAGCATACGTTATATCTGTGCTTGCAGAATTCGCACAGACATGTTGGTCTAATCAGGTTAATTTGGAGGCCAGAGTGGCACTCAGTTCCACAGTAGGTGGAGGTTTAGTCGAGGAAGCTAAGTCCATCTCAGCTGACTTTCTTCTTCTTCGTGGTTCAAGAAACCAAACTAAAAAAATTGGAACCTCTAAAGGAATTACCAAGTATTGCTTTGAGCATGCACATGAAGGTTGCACGATGGTCTCAGTTGGGAGACGTAAGCAAAGTGTCAAGTCAAATCCTACAAAGTTTGAAGAAACGAAGGCACAGAGCCGTTCACCAACAACGGTACTAGATGGAATCGAGGGACAATCGAACAGCACAGAAGATGATACCTTTAGCACTAGGGTCTCAAGCATCACAGATATCCCTTCATTGGGTCCTAAGAATAAGAGCCAATCCAAGTTAAGAAAATTACGCTCCCCATTCAGGCTCATAGTTTCATTCCTTGGTTCACCATTCAGAAGAAGAAAATTTAACATATCCAAAAATGGAAAACGTCAACCTTTGTTGAAGTGCTTCAGCTATGAGCAGATATCCAATGCTACTAATGACTTCCATCTAGATAATTTGGTTGGACGAGGTGGGTACTCGGAAGTATACAGAGGTGATCTTTCTGATGGAAGATCCATTGCTGTGAAGAGGTTGGCCAAGGACAATAAGGATCCTAACAAGGAAAAAGAGTTCCTTATGGAGTTGGGTGTTATAGGACATGTCTGCCATCCTAATACTGCTTCTTTAGTGGGCTGCTGCATTGAAAATGGGCTCTATTTGATTCTCAATTACTCTCAAAATGGAAACTTGGCAACTGCATTGCATGGTAAATCAGGAAATTCACTTGACTGGCCAATCAGATACAAAATTGCTATGGGAGTTGCAAGGGGTCTCCATTATCTTCATAAATGCTGTAAACACCGAATAATTCATCGTGACATTAAAGCCTCCAATGTTCTTCTAGGTCCTGATTATGAGCCACAGATTACCGATTTCGGGCTAGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTAATCCCAGTGGAGGGCACATTTGGATACCTAGCACCAGAGTGCTTTATGCATGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAGTTCTTCTTATGGAGATTGTAACTGGACGGAGACCAGTTGATTCATCAAAGCAAAACATTCTCCTATGGGCAAAGCCTCTCATGGAATCAGGGAATATTGCTGAGCTAGCTGATCCAACAATGGAAGGTAAATATGATGAAGAGCAGCTGTATAGGGTAGTGCTAACGGCTTCATACTGTGTGAGACAAATTGCCACGTGGCGTCCTCCAATGAGCGAGGTGTTAGAGCTGCTAACCAATGGCGAGGACTGTGAGGTTGGAAAGAGCTTGAGGATCCCAAAGTTCACTTCTGATGAATTGGATGATTACTCTATGGTTTTCGGATATGATGTCCCCTCAGACATATCTCTGGAGGAATTTTTGAGAGAATAA 1731 0.4298 MLPTSPAKILIGLSLDPDDSKELLSWAIRILANPNDTIVAVHVLASEDKKKRASIRRRQSQLRQAKAYVISVLAEFAQTCWSNQVNLEARVALSSTVGGGLVEEAKSISADFLLLRGSRNQTKKIGTSKGITKYCFEHAHEGCTMVSVGRRKQSVKSNPTKFEETKAQSRSPTTVLDGIEGQSNSTEDDTFSTRVSSITDIPSLGPKNKSQSKLRKLRSPFRLIVSFLGSPFRRRKFNISKNGKRQPLLKCFSYEQISNATNDFHLDNLVGRGGYSEVYRGDLSDGRSIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTASLVGCCIENGLYLILNYSQNGNLATALHGKSGNSLDWPIRYKIAMGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPECFMHGIVDEKTDVFAFGVLLMEIVTGRRPVDSSKQNILLWAKPLMESGNIAELADPTMEGKYDEEQLYRVVLTASYCVRQIATWRPPMSEVLELLTNGEDCEVGKSLRIPKFTSDELDDYSMVFGYDVPSDISLEEFLRE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4981g00096 576 PANTHER OS08G0249100 PROTEIN 70 540 IPR046958 -
Gabi4981g00096 576 ProSiteProfiles Protein kinase domain profile. 264 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4981g00096 576 CDD USP_Like 8 140 - -
Gabi4981g00096 576 Gene3D Transferase(Phosphotransferase) domain 1 342 543 - -
Gabi4981g00096 576 FunFam Putative receptor-like serine/threonine-protein kinase 231 340 - -
Gabi4981g00096 576 Gene3D Phosphorylase Kinase; domain 1 231 340 - -
Gabi4981g00096 576 Gene3D HUPs 3 154 IPR014729 -
Gabi4981g00096 576 MobiDBLite consensus disorder prediction 154 192 - -
Gabi4981g00096 576 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 115 - -
Gabi4981g00096 576 SUPERFAMILY Protein kinase-like (PK-like) 240 531 IPR011009 -
Gabi4981g00096 576 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 341 545 - -
Gabi4981g00096 576 ProSitePatterns Protein kinases ATP-binding region signature. 270 292 IPR017441 GO:0005524
Gabi4981g00096 576 Pfam Universal stress protein family 8 141 IPR006016 -
Gabi4981g00096 576 Pfam Protein tyrosine and serine/threonine kinase 265 475 IPR001245 GO:0004672|GO:0006468
Gabi4981g00096 576 SMART serkin_6 264 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4981g00096 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 385 397 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4981g00096 Gabi-Chr4981 1100889 1103799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4981g00096 252 527 Trihelix Transcription Factor Family AT1G68690 44.211 8.70e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi4981g00096 PK_Tyr_Ser-Thr 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4981g00096 - - gmx:100782832 981.089