Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4981g00095 ATGGGATCTTCTTTCAGTTGCTGTGGCTCAGAGAAGGTCGAAGAAGTGCCAACATCATTTGGTGTAGTTAACAATTCGTGGAGAATATTCACCTACAAGGAGTTGCATGCAGCTACCAATGGATTCAGTGAAGATAATAAGCTTGGTGAAGGTGGATTTGGAAGCGTCTATTGGGGAAGAACCAGTGATGGTCTCCAGATAGCTGTGAAGAAACTGAAATCAATGAACTCAAAGGCAGAGATGGAATTTGCAGTAGAAGTTGAAGTTCTTGGAAGGGTTAGGCACAAAAATTTACTGGGTCTTAGGGGCTATTGTGTTGGGGATGATCAACGGCTTATAGTCTACGATTACATGCCAAATCTCAGCCTGCTTTCTCATCTCCATGGCCAGTTTGCTGTTGAAGTGCAACTGAACTGGCAAAGGAGAATGAATATTGCAATTGGCTCTGCGGAAGGCCTCTTGTACTTGCACCATGAGGTCACACCCCATATCATCCATAGGGACATCAAGGCAAGCAATGTGCTTCTGAATTCAGATTTTGAACCACTAGTTGCAGATTTTGGGTTTGCAAAGCTAATACCAGAAGGAGTTAGTCACATGACCACCCGTGTTAAGGGTACCTTGGGATACTTGGCACCTGAATATGCCATGTGGGGAAAGGTCTCTGAAAGTTGTGATGTCTATAGCTTTGGAATTCTTCTGTTAGAGCTTGTAACTGGTAGAAAGCCAATAGAAAAGCTTCCGGGTGGGGTTAAGAGAACAATAACTGAGTGGGCTGAGCCTCTGATAACCAAAGGAAAGTTCAGGGATCTGGTTGATTCAAAGCTCAGAGGGAACTTTGATGAAAATCAAGTCAAACAAGCAATCAATGTGGCTGCTCTTTGTGTGCAAAGTGAGCCTGAGAAGCGACCAAACATGAAGCAAGTGGTTAACCTTCTCAAAGGATATGAACCTGATGAGAGAGTGACAAAGATGAGGATAGATAGTATCAAATACAATGAAGAACTATTGGCACTTGATCAACCTAGTGATGACGATGACGATGATGATGGAACCACTGGCTATGGTGTTTTTAGTGCTATTGAAGTCCAAAAGATGAATGATCCTTACAAGCGCAGTGATAACAAGAAAATGGGCTATATGTAA 1146 0.4284 MGSSFSCCGSEKVEEVPTSFGVVNNSWRIFTYKELHAATNGFSEDNKLGEGGFGSVYWGRTSDGLQIAVKKLKSMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFAVEVQLNWQRRMNIAIGSAEGLLYLHHEVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGVKRTITEWAEPLITKGKFRDLVDSKLRGNFDENQVKQAINVAALCVQSEPEKRPNMKQVVNLLKGYEPDERVTKMRIDSIKYNEELLALDQPSDDDDDDDGTTGYGVFSAIEVQKMNDPYKRSDNKKMGYM 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4981g00095 381 SUPERFAMILY Protein kinase-like (PK-like) 26 322 IPR011009 -
Gabi4981g00095 381 FunFam PTI1-like tyrosine-protein kinase At3g15890 14 117 - -
Gabi4981g00095 381 CDD STKc_IRAK 48 315 - -
Gabi4981g00095 381 Gene3D Phosphorylase Kinase; domain 1 14 117 - -
Gabi4981g00095 381 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4981g00095 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Gabi4981g00095 381 Pfam Protein tyrosine and serine/threonine kinase 45 313 IPR001245 GO:0004672|GO:0006468
Gabi4981g00095 381 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Gabi4981g00095 381 FunFam PTI1-like tyrosine-protein kinase At3g15890 118 330 - -
Gabi4981g00095 381 Gene3D Transferase(Phosphotransferase) domain 1 118 335 - -
Gabi4981g00095 381 PANTHER OS01G0253100 PROTEIN 25 321 - -
Gabi4981g00095 381 ProSiteProfiles Protein kinase domain profile. 42 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4981g00095 Gabi-Chr4981 1095951 1098054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4981g00095 1 313 Trihelix Transcription Factor Family AT1G70460 47.950 1.69e-95 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gabi4981g00095 PK_Tyr_Ser-Thr 5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4981g00095 - - gmx:100783365 698.353