Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4981g00092 ATGGATAAAAAGTGCTTCTCATTCCTTCTCTCTTGGTTTCTGATTTTTTTGCTTCTGCAGCTACAGATACAAAGTGGAAGTGGGTCAAATGCAACATCGAAAGGAGTGATCAAGTTGAGAGTAGGGGTACCCAAGAAAGATGGTTTCACCCAATTTGTGAAAGTTGTTTGGGACTCTCATGAAAAGAAGTACAATGTCTCTGGATATTGCATGGATGTTTTCGATGCCGTTGTAAACCTCTTACCCTTCAAGGTTTCTCTAGAAATCAAACCTTTTGTTAATGAATCAAGAGAGAGTGCTGGATCATACGATTCACTTGTCCAACAGGTCCCAAAAAAGTATGATGTTGTGGTAGGGGATGTAACAATCGTGGCCAATCGTTCAAAATTTGTAGATTTCACACTGCCATTTACAGAATCAGGAGTTACAATGCTAGTACCAGTTCAACATGACAAGCACAAAACCATGTGGATTTTTGTCAAACCCTTCAGCTGGGATCTTTGGTTAAGCATAGTCATAATATCTATGTTCATAGGAATTGTCATACTCATCATGGAAAGAAATGTAAGTGCCCTCCCTAATCAGGAAGGTTCGTCAAATCGAAAACAACTCAGCGCGTTAAACATATTATGGTTTCCAATATCACAAGCCGTTCTTCCTGAAAGACAGGTAGTCGCCAAGAACTGTTCCAGATTTGTTTTGATGGTTTGGCTTCTATTGGCGTTTGTCCTCATGCAAAGTTATACTGCAAATTTGACATCTATATTGACCTTAGATCAGCTGCAACCAAGTTTTCTTAAAGTGGATGATCTAAAAAATGGGGATTATTATGTTGGATATCAAACCGACTCTTTCGTTTATGATTTGTTGGTACAGCGATTGAAGTTTAACCCATCCAAGCTGAGGGCATATAGCAACATTTATGAGTATCACCATGCTTTAAAGATTGGAAGCCAAAGTGGGGGTGTGGCAGCTATATTTGATGAACTACCCTTCCTTAAAGTCTACCTTCAAAAATTTGGATCCAATTACATCATGGCCGGCCCTACCTATCGAACTGATGGGTTTGGTATCGCATTCCCTTTAAACTCCAATCTTACCGCTCACTTTTCAAGAGCAATCTTGAATGTGACTGAAAGTGATTTAATGGATAAGATTGAGGAAAAATATTTTGGGAAGAATGAAGGACAAGGACAAGACCAGCCTGCCCAATTGTCTACCGCAACTCCAAGCAGTCTCACCTTTCATAGCTTTGCAGGGCTCTTCTTGATCACCGTGGTTACTAATTTATTAGCATTACTCGTCTCAGAAACTGTTATTTGGCGAAGACCCGTTTTGATGGCTAAAGAATACAGTCAGAAGTATTTGTTCCGCACTCCAACTTCCACAGAAACAAGTGTTCATCCAAGTCATGATTCAACACAGGGAATAGAATTAGCCGTTTAA 1446 0.3976 MDKKCFSFLLSWFLIFLLLQLQIQSGSGSNATSKGVIKLRVGVPKKDGFTQFVKVVWDSHEKKYNVSGYCMDVFDAVVNLLPFKVSLEIKPFVNESRESAGSYDSLVQQVPKKYDVVVGDVTIVANRSKFVDFTLPFTESGVTMLVPVQHDKHKTMWIFVKPFSWDLWLSIVIISMFIGIVILIMERNVSALPNQEGSSNRKQLSALNILWFPISQAVLPERQVVAKNCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLQPSFLKVDDLKNGDYYVGYQTDSFVYDLLVQRLKFNPSKLRAYSNIYEYHHALKIGSQSGGVAAIFDELPFLKVYLQKFGSNYIMAGPTYRTDGFGIAFPLNSNLTAHFSRAILNVTESDLMDKIEEKYFGKNEGQGQDQPAQLSTATPSSLTFHSFAGLFLITVVTNLLALLVSETVIWRRPVLMAKEYSQKYLFRTPTSTETSVHPSHDSTQGIELAV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4981g00092 481 CDD GluR_Plant 38 391 - -
Gabi4981g00092 481 Pfam Ligand-gated ion channel 394 427 IPR001320 GO:0015276|GO:0016020
Gabi4981g00092 481 Gene3D - 342 398 - -
Gabi4981g00092 481 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 443 IPR015683 -
Gabi4981g00092 481 Gene3D - 35 156 - -
Gabi4981g00092 481 Gene3D - 157 295 - -
Gabi4981g00092 481 SMART GluR_14 38 393 IPR001320 GO:0015276|GO:0016020
Gabi4981g00092 481 FunFam Glutamate receptor 2.7 34 155 - -
Gabi4981g00092 481 Pfam Bacterial extracellular solute-binding proteins, family 3 64 393 IPR001638 -
Gabi4981g00092 481 SUPERFAMILY Periplasmic binding protein-like II 9 394 - -
Gabi4981g00092 481 MobiDBLite consensus disorder prediction 462 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4981g00092 Gabi-Chr4981 1039754 1041562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4981g00092 38 435 Ion Channels AT5G11210 38.710 2.04e-89 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4981g00092 K05387 - gmx:100811144 654.825