Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4981g00090 ATGGTCGACGGCGGCGAGTTCGCCGGCACCATTTGCTCGATCTGTTACGAAGTTCTCAAGCCCGTTACGGAAGATCTTCAATCAATCTCTATCTGCGGCCATGTCTTCCACGAGCTCTGTCTGCAGCAATGGTTTGAGTACTGTTCAAGAGCGAAGAAGCACACTTGCCCCGTTTGCAAGCAGAGTTGCAGGGCCAGCGATGCGTGCAGGCTTTATTTTCAATCGGTTGGAGAAGTGAACGATGCTGTTCTTCCTCGGAATCCCGTTGATTTTGAGGAAGATGCTGGGGTTCTGCGCAGGGAAGTCAAAAGATTGGAGATGCAAGTTTCAATGCTTAGTTCGGAATCGAAACAGAAAGCAAAGGACTTGGAAGAACTTACCGAGGAGCTCTGTGCTTGCAAGGAGCAGGCAAAGATAGAAATAGCATTGAAAAACGAGGCCTTAAATCAAAAAGCATCCATACAATTCCAGCTTCATATGAAATCAGAGGAGCTTGAGAAGTCAAGTTTGGAGCGTTTTAGATTACAAGATAGAAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTGTCTGATCTGGACCTTGATGAAGAGGAGGTTTTGAAGCTTGCCACTTTGGGTAACGGTGCCAACAGCAAAGACACGATAGACACATTAAAAAGATCTCTGGTCTTGCGGAACAGGAGTTACAAAGAATTAATGGCCAAGTGCAATCTTCTGGGAAGAGGCGAGGCTCGTTATAGTAAAAAGCTTGAGAAGGCTAAAGAGAAAATCATTAAACTGAAGGCTAGGATACAAGAACTGGAGACAACAGCAGAAGTAAAAGAAAACGAATATCTGATGTCTCTGAAAGTTTCAAAGAAAACAAAGTGTTCAAAGAATCTTGAAAATAGTATCAATTGTAATTTTGATGTGACTGCAAATGACGACAGTAAATCTTCACAATCTTTGAAGATAGAGAACTGCAATGCTACTAAGAATAACGCTGTGGATATTAGAAATGGTAGTAAAACTATCTTGTCTCCTGATAAAGAGATAGATTTTATCTCAATTGATGAAGATAATTCAGAATTTACAAAAGCTTTGCCTGGACGTCCAAAACACAACTACAAAGATCAAGACAGGGTTGATGATGCTTTTAGCAAGCCTTCTCTGGCTTCTGGCATAAAGACTGAAACATTGTTGCAAGGAAAATGTAATTTGCTTGAGTCTTCAAGAGTTGATATTGACATTGAAATGGCTAATATTTCTGCTGGCACTATGGATGAAGATGTGATGGTACAAGCCAACGTTCAACAAGTTCAACCCATGGTTAACATTAGAAAGGAGTCTCCATTAACACTTTCAAATTCAGCAAATACCTGTTTTTCTGGTGGATTGCTTGGACCTGATGGAACTCATCGATACTTGGGTAAATGGTGCAAGCGTGGACAAAACAGTGAATCAACATCTGCAAAAGGTTCAAGTAATGGGGATTTGATAGCTGTCGGGGCTGATGGTAGAGGTGGCAAAATAAAAGTTCTAAGGACTCCAAACCAAATATTTTCGGATGGAAAGGAAAATTCAGTAAGTTCAAAAAGGTTAAAATTTGGACAAAAACCAAGTAGTTTGCAATCCAAGGGGTACCTGCAGATAGAACACTTCTTTGCGAGGACCAATCAGTAA 1671 0.4081 MVDGGEFAGTICSICYEVLKPVTEDLQSISICGHVFHELCLQQWFEYCSRAKKHTCPVCKQSCRASDACRLYFQSVGEVNDAVLPRNPVDFEEDAGVLRREVKRLEMQVSMLSSESKQKAKDLEELTEELCACKEQAKIEIALKNEALNQKASIQFQLHMKSEELEKSSLERFRLQDRNMALAKELAALKLVSDLDLDEEEVLKLATLGNGANSKDTIDTLKRSLVLRNRSYKELMAKCNLLGRGEARYSKKLEKAKEKIIKLKARIQELETTAEVKENEYLMSLKVSKKTKCSKNLENSINCNFDVTANDDSKSSQSLKIENCNATKNNAVDIRNGSKTILSPDKEIDFISIDEDNSEFTKALPGRPKHNYKDQDRVDDAFSKPSLASGIKTETLLQGKCNLLESSRVDIDIEMANISAGTMDEDVMVQANVQQVQPMVNIRKESPLTLSNSANTCFSGGLLGPDGTHRYLGKWCKRGQNSESTSAKGSSNGDLIAVGADGRGGKIKVLRTPNQIFSDGKENSVSSKRLKFGQKPSSLQSKGYLQIEHFFARTNQ 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4981g00090 556 Coils Coil 109 129 - -
Gabi4981g00090 556 SMART ring_2 12 59 IPR001841 -
Gabi4981g00090 556 Pfam Ring finger domain 11 60 IPR001841 -
Gabi4981g00090 556 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 555 - -
Gabi4981g00090 556 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Gabi4981g00090 556 Coils Coil 246 280 - -
Gabi4981g00090 556 CDD RING-H2 12 60 - -
Gabi4981g00090 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 171 IPR013083 -
Gabi4981g00090 556 SUPERFAMILY RING/U-box 10 64 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4981g00090 1 556 C3H Transcription Factor Family AT4G01270 42.707 1.33e-127 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4981g00090 K11985 - gmx:100812811 760.37