LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4981g00089	ATGGAGGACGATTGGGATCTCTACGCTGTAGTCAGAGGCTGCACCACCACCACCTCCGCCGCCACAACCTCCTCCGCCACCACCGTCTCCGCCGCCAGTACCGCCGTCTCCTCTGTATCTTCCTCTGTTTTTGGGACTTTTTACCAGCCTTCAGCTTCCTGCAGCATCTTCTCTATTTTTCCTAATGAACAAGGAGACCAAGTTTTACCCCTTTCAAAATCAAACCCTTTTGAAGCAACTAGTTCCATTGAAGAATTGAATGATCTTTGCAAGCCTTTCTTCCTCAAATCACAGCCTCCTTCATTGAAATCCTCTTCTTCACTTACTTCTTTCTCTTTTTCATCTGCTCCCAAATCACCTCAGAAGCAGCAAAAACAACATCAGACTAGTAAGCAGCCTCACCATGCTGGTTCTGCCACCGCCCCACGACCTAAAAGAAGGAAGAATCAGCTTAAGCAAGTTTGTGAAGTGCCAGCTGAGAATCTTTCTTCAGACATATGGGCATGGAGGAAATATGGTCAGAAACCAATTAAAGGGTCACCATATCCTAGGGGATACTATAGATGTAGCAGTTCAAAAGGGTGCTTAGCTAGGAAACAAGTGGAGAGGAACAAAACCGACCCAGCAATGTTCATAGTGACCTACACAGGAGAACATAGCCACCCTGCTCCTTCTCATCGAAACTCTCTTGCTGGGTCCACACGCCAGAAGCCACTGATTCCTAATCAAACAGCTACTGCAGCCACCTCAGACTCTGGCAAATCACTGACAAAACCGGTTTCTCCAACCACCTCAGAAGAGGTTGCAAAGTCAGAGAGCATAGAGGATATGGAAAGTTTGATGGATGATGATGATGATGAGGAAGAAAATGAATTTGGGTTATCATCAGATACGATGCTAACAGATGATTTCTTTGAAGGTTTAGATGAACTAACAGGGTCTGGTGATTGCTTTGCCGAACCTTTTTCAGATAGTGTTGCTCTTCCTTCTTGTATGCCCAATAATGCTGCCACTGCAGCTGGTGGTAGCTGA	1032	0.4593	MEDDWDLYAVVRGCTTTTSAATTSSATTVSAASTAVSSVSSSVFGTFYQPSASCSIFSIFPNEQGDQVLPLSKSNPFEATSSIEELNDLCKPFFLKSQPPSLKSSSSLTSFSFSSAPKSPQKQQKQHQTSKQPHHAGSATAPRPKRRKNQLKQVCEVPAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKTDPAMFIVTYTGEHSHPAPSHRNSLAGSTRQKPLIPNQTATAATSDSGKSLTKPVSPTTSEEVAKSESIEDMESLMDDDDDEEENEFGLSSDTMLTDDFFEGLDELTGSGDCFAEPFSDSVALPSCMPNNAATAAGGS	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4981g00089	343	Gene3D	WRKY domain	147	217	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4981g00089	343	MobiDBLite	consensus disorder prediction	277	293	-	-
	Gabi4981g00089	343	SMART	WRKY_cls	163	223	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4981g00089	343	Pfam	WRKY DNA -binding domain	165	222	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4981g00089	343	ProSiteProfiles	WRKY domain profile.	158	224	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4981g00089	343	MobiDBLite	consensus disorder prediction	217	236	-	-
	Gabi4981g00089	343	FunFam	WRKY transcription factor 22	147	217	-	-
	Gabi4981g00089	343	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	3	313	IPR044810	GO:0003700
	Gabi4981g00089	343	MobiDBLite	consensus disorder prediction	243	268	-	-
	Gabi4981g00089	343	MobiDBLite	consensus disorder prediction	106	149	-	-
	Gabi4981g00089	343	MobiDBLite	consensus disorder prediction	221	236	-	-
	Gabi4981g00089	343	MobiDBLite	consensus disorder prediction	243	296	-	-
	Gabi4981g00089	343	SUPERFAMILY	WRKY DNA-binding domain	161	224	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4981g00089	343	MobiDBLite	consensus disorder prediction	106	136	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4981g00089	Gabi-Chr4981	925043	926511	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4981g00089	1	342	WRKY Transcription Factor Family	AT4G01250	44.857	3.67e-81	247

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gabi4981g00089		WRKY	1.2e-25	CL0274