Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4981g00070 ATGTCCTCCTCTTACCCTAATTCTCCACCCCCCACCACCTACCTCACCAATCTCGGCTTTGGCTATTCAATCGCCATCGCCCTCGGCTTCCTCTTCCTCTTCTCAACGCTCATCCTCTGCTCCTACCTATGCTGCCGCACTCTCCGCCACCGCAACCGCAACCGCAACGGCACTCACAACCCCACCAACTCCGACGGCGTCGTTCTGCCGCGGATAATCTTCGTGGCGGAGGACGACGACGAAGACCAGCAGCGTGACGGCGGCGACAACATCGTTATGGGTCTTGACCAGAACGTCATAAACTCGTATCCGAGGTTCCGGTACGCTAAGGATGCGGGACACGACACCACGTGCTCGATCTGTTTGTGTGAGTACAAGGAATCGGAGATGCTGAGGATGATGCCGGAGTGTCGCCACTATTTTCATCTCTGTTGCCTCGATTCTTGGTTGAAGCTCAATGGGTCTTGCCCCGTTTGCCGGAACTCCCCCATGCCGACGCCGCTCTCGACGCCGCTGCAGGAGGTGGTTCCGCTCTCTCAGTACGCCGCTGATAGAAGGGGAATTAGGTGA 570 0.5754 MSSSYPNSPPPTTYLTNLGFGYSIAIALGFLFLFSTLILCSYLCCRTLRHRNRNRNGTHNPTNSDGVVLPRIIFVAEDDDEDQQRDGGDNIVMGLDQNVINSYPRFRYAKDAGHDTTCSICLCEYKESEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYAADRRGIR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4981g00070 189 SMART ring_2 118 159 IPR001841 -
Gabi4981g00070 189 Pfam Ring finger domain 117 160 IPR001841 -
Gabi4981g00070 189 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Gabi4981g00070 189 SUPERFAMILY RING/U-box 102 165 - -
Gabi4981g00070 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 165 IPR013083 -
Gabi4981g00070 189 PANTHER RING-H2 FINGER PROTEIN ATL67 11 186 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4981g00070 Gabi-Chr4981 819793 820832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4981g00070 14 180 C3H Transcription Factor Family AT5G06490 35.602 4.22e-34 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4981g00070 - - vra:106773185 278.87