Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4981g00030 ATGAGCGTGGCGTTTTTGGACCCAGGGAACCTGGAAGGAGACCTACAAGCTGGTGCCATTGCTGGGTACTCTTTGCTTTGGTTGTTGGTGTGGACAACCATCATGGGGTTGCTGATACAGCTTTTGTCGGCGAGGCTTGGGGTGGCGTCGGGGCGGCACCTGGCGGAGCTGTGCAGGGAGGAGTATTCGAATTGGGCGAGGCTTGTTCTGTGGGTGATGGCTGAGTTGGCATTGATTGCTGCTGATATTCAAGAGGTTATTGGAAGTGCCATTGCTATTAAGATTCTTAGCCATGGGATTGTGCCTATTTGGTTTGGTGTGGTAATCACTGCCTTAGATAGTTTCGTCTTTTTATTTCTCGAGAACTATGGAGTTAGGAAGTTGGAAGGTGTTTTCGCGGTTTTCATTGGAACTATGGCCTTCTCTTTTGCATGGATGTTCTTTGATACAAAGCCCAGTGAAGAAGAACTTGTGATGGGTATTTTGATCCCAAGAGTTAACTCAAAAACACTTCGCCAAGCTGTGGAAATTGTGGGTTGTGTTATTACCCCACATAATGTATTCCTCCATTCTGCATTAGTACAATCAAGGGACATTGATATCCGTAACAAAGGTCAGGTTCAAGAGGCTATCAACTACTACTCGATTGAGTCTTCAGTTGCACTTTTAATCACCTTGGTGATCAACCTATTTGTGATAACTGTTTTCGCTAGGGTGTTCTATGGTACAGAACAAGCCACAAGCATAGGATTAGTAAATGCAGGGCAATATCTTCAGGAAAGGTATGGTGGAGGTTTATTTCCAATTCTCTATATATGGGGTATTGGTTTATTAGCTGCTGGACAAAGTAGCACCATTACTGGCACATATGCTGGCCAGTTTATCACAGAGGGTTTTCTGAAGCTCAATATAAAGAAGTGGTTGAGGGCATTGATCACTCGAAGTTGTGCAATTGTTCCAACTATGATTGTAGCAATTGTTTTTAATACATCAGAAGGTTCATTGGATACCTTGAATGAATGGCTTAATGTGCTCCAAGCAATACAGATTCCTTTTGCACTTATCCCTCTTCTTACTTTGGTGTCCAAAGAGGAGGTCATGGGGACCTTCAGAATAGGGCCTATAGTAGAGAGGGTGTCTTGGACTGTGGCTGTTTTGGTAATAATGGTTTATGGATATATGCTATTAGATTTCTTCCTCTCAGAAGTGAAGGGGCTGTTGTTTGGTTTTTTAGTCTTCCTTGGTGCTGCAGCATGGATTTCATTTATTGCATATCTGGTTAGACATAGTGGTGCTATTACTTCTATCCTGGTGAGGTCCCCTAATTCTAAAGGCTTCTTCTCTCTTGCTGGGAACTAA 1359 0.4319 MSVAFLDPGNLEGDLQAGAIAGYSLLWLLVWTTIMGLLIQLLSARLGVASGRHLAELCREEYSNWARLVLWVMAELALIAADIQEVIGSAIAIKILSHGIVPIWFGVVITALDSFVFLFLENYGVRKLEGVFAVFIGTMAFSFAWMFFDTKPSEEELVMGILIPRVNSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEAINYYSIESSVALLITLVINLFVITVFARVFYGTEQATSIGLVNAGQYLQERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMIVAIVFNTSEGSLDTLNEWLNVLQAIQIPFALIPLLTLVSKEEVMGTFRIGPIVERVSWTVAVLVIMVYGYMLLDFFLSEVKGLLFGFLVFLGAAAWISFIAYLVRHSGAITSILVRSPNSKGFFSLAGN 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4981g00030 452 PRINTS Natural resistance-associated macrophage protein signature 343 362 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4981g00030 452 PRINTS Natural resistance-associated macrophage protein signature 281 300 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4981g00030 452 PRINTS Natural resistance-associated macrophage protein signature 174 197 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4981g00030 452 PRINTS Natural resistance-associated macrophage protein signature 125 146 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4981g00030 452 PRINTS Natural resistance-associated macrophage protein signature 70 96 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4981g00030 452 PRINTS Natural resistance-associated macrophage protein signature 100 119 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4981g00030 452 PRINTS Natural resistance-associated macrophage protein signature 309 326 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4981g00030 452 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 1 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4981g00030 452 Pfam Natural resistance-associated macrophage protein 12 373 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4981g00030 452 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 1 367 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4981g00030 452 Hamap Divalent metal cation transporter MntH [mntH]. 1 399 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4981g00030 452 NCBIfam Nramp family divalent metal transporter 2 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4981g00030 Gabi-Chr4981 442511 445378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4981g00030 1 430 Inorganic Solute Cotransporters AT1G47240 76.512 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4981g00030 K21398 - gmx:100801411 827.78