Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4981g00023 ATGACTGAGGAGCACAAGAGAAAAACTAATGATCCTTTTCTCAAGCCAGGGAGACAGCAAAATATGCCAAGGTCACCTAGATTGTGCACACCTATTAAGAAGGACTGGCCAGAGAGTTTACCAAATGAAAATGTGATTGGTAATGAAGATAATGGTTTGAGTAGATATGTTACTTCCTTAGCTGGATCTGGAACTGCTAGTACTAGTTTTTGTTCCATGACTGATTCTGAACACATTGTTGAAGAGTTACATGTTAGGAATTATAAGAACCCAAATACAGGTTTACTTAGCCACTCTCACAATTCAAGACAGCCTCAGAAGAATCATTTGGCTATTGAGTCTAAGTATAATACTTTGAGTAGAGAAATTGTACCAAAGGTTGAAGAGCAGATACCACATAGATTAAGCAAAGGACTTAAGGAAATTGATTCTGGATTTTGGGGCCTGAAGTCTTTGTGTAGCAAGAACTTAAATCATGAGCTACTGAAAGACCCTATAAATATAAGCAATATGGACAAGACTAGCACCTCAAGCAATGCACATCTTGTTAGCAACACAATGCAGAAACCTTCATCTACATATAATTTTCCTGAATTGATTGTAAAGCAAACAATGAAGGGAAAGGGAGTTATTTACAAAGATTTAGACAAAAGGCAAGAGGATGAGAAACCTGCTTTTGCAACTAAGTTTCAATCTGATACATTTCTGAGATCAAATATTGATGATGATAATAAGCCTTCCTTGCAAGGAACTGACATGTCTGGCACAGAATCTTTAAACGATGGACTCAACTTAAGAGGGTGGCTGAAATCTTCAGGTCATGAAATGAAGAAATCAGAAAGGCTACATATATTTAAGCAGATCTTGGATTTGGTTGATTTTGCACACTCACAAGGGGTTTTCTTGCAAGACTTACGACCATCTTGTTTCATTTTATCCTCTGCAAGTAAAATTAAATACATTGGTTCATGTGGCCAACTAGAGTTACATAATAAAGTCATGACCTGCAATGTGACTAGGAAAAGGCCTTTGGAGCAGGATATCTGTGCTTGCCAAAGTTTCAGTGCTAATCAGCAAAAGCTTTGTGAGGAAACAAGATCTCTTAGGCAGCAGGACCACTCCACCTTTATTCATGGCTGCAGGTCTACAACAGTGAATCAGAATGAATCTTACAGAAACAGGCCCTTGGAATCAAGGAATAAAGAAATTCTGTGCCAAAATGATTTCAGTTGTCAACATACTTTTACTGAAGAAAAGCATTGTATGTCTGTAACCATTCAGTTAGAAGAAAAGTGGTATTGTAGTCCAGAAGAGCTCAATGAGGGAGTTTGCACGTTTTCATCAAATATTTATAGCCTTGGAATTCTTCTTTTTGAGTTGCTGTGCAATTTTGAGTCATGGGAGGCGCATTCAACAATGATGTTGGATTTGTGTCATAGAATCTTACCGCCAAGATTTCTGTCAGAAAATCCAAGGGAAGCTGGTTTTTGTCTTTGGCTTCTGCATCCTGAACCTTCTTCTCGCCCCAATACCAGGATGATTTTAGAATCTGAATTTATATGTGAACCAGAGGAATCAAATTCTGGAGATGATGCTGCAGTAACTGATGATGATAAGGCTGAAACTGAGGAATTAATACACTTTTTAATTTCACTTGAAGAAAATAAGAAAAAACAGGCAGCCAAGTTGGCAGAAGAGCTAAATTGCTTGAATGAAGATATTAAGGAAGTAGAAAGGAGTTATTCATCTGGGACAGATTCATTATTTACTCTGGCACAAATGAGCTATCCTAAATTGAAAGGAAACAGTTTACATTTTCAAGATCCTTCCACTTTAGATATTAGTAGACCTATTCCAAGGTCATTTGCTAATGAAGCAAGACTTATGAGTAACATAAATCAGCTAGAGAATTCTTACTTTTCCATGAGATCCCAAGTTCTGGTTAAAGAAGTTTCAGCTGTTGCAAGCTATGATAAAAATGTGATAGAAAGTAGATTGAGATTGCCTCATGTAGAGAATGCTAATAAGGATCCAAGGAAAATTCGGAGTTCTGTTGGTTGTCTAGGACCCTTCTTTGAAGGATTATGCAAGTTTGCTCGTTACAGCAAGTTTCAAGAGTGTGGTACATTAAGAAATGGAGATCTTCTTAGTTCTGCTAATGTAACATGTGCTTTAAGTTTTGACCGTGATGAGGATTACATTGCAGCAGGTGGAGTTTCAAAGAAAATCAAGATTTTTGACCTCAATACTATTTCTAGTGATTCTATTGACATCCAATACCCTGTAGTTGAGATGTCAAATAAATCAAAACTTAGCTGTGTGTGTTGGAACACTTACATAAAAAATCATCTGGCATCTACTGACTATGATGGTGTGGTTCAGATGTGGGATGCAGGCACTGGTCAGCCATTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTCTTTCCGACCCAAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTGTGAAACTCTGGAATATCAGCGAGAGAAATTCTTTAGGAACCATATGGAGCCCTGCCAATGTATGCTGTGTTCAGTTCTCAGCATACTCAACCCATCTTATATTTTTTGGATCAGCTGATTACAAGGTGTATGGTTATGATCTTCGTCACACTAGAATCCCTTTGTGCACATTAGCTGGTCATGGAAAAACTGTTAGCTATGTGAAATTTCTAGATGCTGAAACAGTTGTCTCTGCTTCCACTGACAACACTTTGAAGCTATGGAACCTGAAGAAAACCAGCTCTTCTGAGTTGTCATCTGATGCTTGTGGCTTAACCTTTAAAGGTCATAGAAATGAAAAGAATTTCGTGGGTTTATCTGTTTTGGATGGATATATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATCTTTGCCAGTGCCAATTGCTTCTCACAAATTTGAGTCAATTGATCCCATTTCTGGTCATTCAAATAGTGGTGATAATAATGGACAGTTTGTTTCTAGTGTTTGCTGGAGAAAGAAATCTAACATGCTTGTTGCCGCCAACTCAGTTGGAATTGTGAAACTACTGCAGATGGTCTGA 3102 0.3788 MTEEHKRKTNDPFLKPGRQQNMPRSPRLCTPIKKDWPESLPNENVIGNEDNGLSRYVTSLAGSGTASTSFCSMTDSEHIVEELHVRNYKNPNTGLLSHSHNSRQPQKNHLAIESKYNTLSREIVPKVEEQIPHRLSKGLKEIDSGFWGLKSLCSKNLNHELLKDPINISNMDKTSTSSNAHLVSNTMQKPSSTYNFPELIVKQTMKGKGVIYKDLDKRQEDEKPAFATKFQSDTFLRSNIDDDNKPSLQGTDMSGTESLNDGLNLRGWLKSSGHEMKKSERLHIFKQILDLVDFAHSQGVFLQDLRPSCFILSSASKIKYIGSCGQLELHNKVMTCNVTRKRPLEQDICACQSFSANQQKLCEETRSLRQQDHSTFIHGCRSTTVNQNESYRNRPLESRNKEILCQNDFSCQHTFTEEKHCMSVTIQLEEKWYCSPEELNEGVCTFSSNIYSLGILLFELLCNFESWEAHSTMMLDLCHRILPPRFLSENPREAGFCLWLLHPEPSSRPNTRMILESEFICEPEESNSGDDAAVTDDDKAETEELIHFLISLEENKKKQAAKLAEELNCLNEDIKEVERSYSSGTDSLFTLAQMSYPKLKGNSLHFQDPSTLDISRPIPRSFANEARLMSNINQLENSYFSMRSQVLVKEVSAVASYDKNVIESRLRLPHVENANKDPRKIRSSVGCLGPFFEGLCKFARYSKFQECGTLRNGDLLSSANVTCALSFDRDEDYIAAGGVSKKIKIFDLNTISSDSIDIQYPVVEMSNKSKLSCVCWNTYIKNHLASTDYDGVVQMWDAGTGQPLSQYMEHQKRAWSVHFSLSDPKMFASGSDDCSVKLWNISERNSLGTIWSPANVCCVQFSAYSTHLIFFGSADYKVYGYDLRHTRIPLCTLAGHGKTVSYVKFLDAETVVSASTDNTLKLWNLKKTSSSELSSDACGLTFKGHRNEKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPIASHKFESIDPISGHSNSGDNNGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4981g00023 1033 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 893 926 - -
Gabi4981g00023 1033 SMART serkin_6 194 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4981g00023 1033 ProSitePatterns Trp-Asp (WD) repeats signature. 911 925 IPR019775 -
Gabi4981g00023 1033 Pfam WD domain, G-beta repeat 889 924 IPR001680 GO:0005515
Gabi4981g00023 1033 Pfam WD domain, G-beta repeat 802 840 IPR001680 GO:0005515
Gabi4981g00023 1033 PANTHER PROTEIN SPA1-RELATED 2 18 1033 IPR044630 GO:0009640
Gabi4981g00023 1033 Gene3D Transferase(Phosphotransferase) domain 1 262 529 - -
Gabi4981g00023 1033 Gene3D - 692 1033 IPR015943 GO:0005515
Gabi4981g00023 1033 ProSiteProfiles Protein kinase domain profile. 136 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4981g00023 1033 Coils Coil 553 580 - -
Gabi4981g00023 1033 SUPERFAMILY Protein kinase-like (PK-like) 230 522 IPR011009 -
Gabi4981g00023 1033 ProSiteProfiles Trp-Asp (WD) repeats profile. 893 933 IPR001680 GO:0005515
Gabi4981g00023 1033 SMART WD40_4 886 924 IPR001680 GO:0005515
Gabi4981g00023 1033 SMART WD40_4 843 882 IPR001680 GO:0005515
Gabi4981g00023 1033 SMART WD40_4 758 797 IPR001680 GO:0005515
Gabi4981g00023 1033 SMART WD40_4 935 974 IPR001680 GO:0005515
Gabi4981g00023 1033 SMART WD40_4 800 840 IPR001680 GO:0005515
Gabi4981g00023 1033 SMART WD40_4 985 1031 IPR001680 GO:0005515
Gabi4981g00023 1033 SMART WD40_4 703 747 IPR001680 GO:0005515
Gabi4981g00023 1033 MobiDBLite consensus disorder prediction 1 36 - -
Gabi4981g00023 1033 PRINTS G protein beta WD-40 repeat signature 827 841 IPR020472 -
Gabi4981g00023 1033 PRINTS G protein beta WD-40 repeat signature 911 925 IPR020472 -
Gabi4981g00023 1033 PRINTS G protein beta WD-40 repeat signature 784 798 IPR020472 -
Gabi4981g00023 1033 ProSiteProfiles Trp-Asp (WD) repeats profile. 807 849 IPR001680 GO:0005515
Gabi4981g00023 1033 MobiDBLite consensus disorder prediction 239 258 - -
Gabi4981g00023 1033 SUPERFAMILY WD40 repeat-like 720 1030 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4981g00023 Gabi-Chr4981 353786 361563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4981g00023 804 973 Miscellaneous Gene Families AT5G08390 25.000 7.24e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Gabi4981g00023 WD40 0.018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4981g00023 K16240 - gmx:100802144 1541.94