LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4981g00001	ATGCCCCCAACGCTGTTATCGCTGCAACTTCGTCTTCTCCCAATGAAGACCCACACTCTTCCCATTTTCTCTAGAACCTTCTTATCCCCCTTCAAGTTCAAATACCTCGCCCTTCGAAACCCACAGCTTCTTAAGCCAACGCGCCCTTTCTCCACCAGGGCCCACACGCGCAGTGATAATGTTCGTGGTTCCGCTTCCAAGAGTCTCATCGACGATGAGGCCGAACTCAGTGACTGGGTCGACGAGTTGCGCACCGGTCGACCCGAAAGGTTCGCCGAGCCGACTCAGAATTCCAGGGTTAGCCACGATAATAAAGACGAATTTAGGTCAAGGAGGAACAATAATAATAATAGTAATAGTAATAGGGGTTCTGTGTTGGGGAAGAGAAGGGGTGAGGATTTGAGTAGAGGAAGAAACAATGTTAATGCGGTGAGGAAGTTTCAACCGAGGAGTAATGTTGATGATGATGAAGATGATGATGATGATGATGACGTGGCGATGAGTGATTTTCTTAGTGAAGATGATGATGAAGAAGAAGGGAGTGAGGATGAGGAGATATTGAATAAGAGTAGAACTGCTTTGTTTGGTCAAAAAAAGAGCACTGAACCAACTCCAAGAGCTTCTTCACCTGGTGGATCTGATTCTTCTTATTTGAGTGACACCAGATTCGACCAATGTTCAGTCTCCCCACTTTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACTGTAGTGCAGGAGGCAACTCTTCCCCTCATTCTCAGAGGTAAGGATGTCCTTGCCAAGGCTAGAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAAGTCACCTTCAAGTGACCGTGATCAAAGGCGGCCACCAATTCTTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAAGCCACTAAACTGCTGAAGTATCATCCTTCTATTGGTGTTCAAGTTGTGATTGGCGGGACAAGACTTGCTTTAGAACAGAAACGCATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTTGAGAATACTGCTGGTTTTGCAACTAGGCTGATGGGTGTGAAGGTTTTGGTGCTTGATGAAGCCGATCATTTGCTAGACATGGGATTTCGCAAAGATATTGAGAAGATAATTGCTGCAGTCCCTAAACAAAGACAAACACTTATGTTTTCTGCCACCATTCCAGAAGAGGTGCGTCAAGTCTGTCATATTGCTCTGAGAAGGGATCATGAGTTTATCAATACAGTTAAAGAGGGGACCGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAGTTTCCCCGTTAGACAAGCATTTCTCTTTACTCTATGTTCTTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGATCACAAGACTTGTTGCTGATCTTCTTGGTGAGTTGAAATTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGGACCAGAGTCTCTGAAGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCGGATGTATCTGCACGTGGAGTTGACTATCCAGATGTCACTCTTGTTGTACAGGTTGGTTTACCATCTGATAGAGAACAGTATATACATCGATTGGGTAGAACAGGCCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGGAAGAGTTTTTTTTATCTACCACAAAAGATTTGCCTATTCAGAAAGCTCCTGTACCTTCAGTTGATCTTGACACTCAGAAAAAGGTGGAAAGGGCTCTATCCCATGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCCTGGCTTGGTTACTACAATTCCAACAAGAAAGTGGGGCGAGACAAGCTGAGGCTAGTTGAGCTTGCAAACGAGTTCAGTAGAAGCATGGGGCTTGATAACCCTCCAGCTATTCCTAAGCTAGTCCTTGGGAAGATGGGCCTTAGAAACATCCCTGGTTTACGTTCCAAATAG	2070	0.4502	MPPTLLSLQLRLLPMKTHTLPIFSRTFLSPFKFKYLALRNPQLLKPTRPFSTRAHTRSDNVRGSASKSLIDDEAELSDWVDELRTGRPERFAEPTQNSRVSHDNKDEFRSRRNNNNNSNSNRGSVLGKRRGEDLSRGRNNVNAVRKFQPRSNVDDDEDDDDDDDVAMSDFLSEDDDEEEGSEDEEILNKSRTALFGQKKSTEPTPRASSPGGSDSSYLSDTRFDQCSVSPLSLKGVKDAGYEKMTVVQEATLPLILRGKDVLAKARTGTGKTVAFLLPSIEVVAKSPSSDRDQRRPPILVLVICPTRELASQAAAEATKLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATIPEEVRQVCHIALRRDHEFINTVKEGTEETHSQVRQMHLVSPLDKHFSLLYVLLKEHIADDVDYKVLVFCTTAMITRLVADLLGELKLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPSDREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTTKDLPIQKAPVPSVDLDTQKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKLRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRSK	689

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4981g00001	689	MobiDBLite	consensus disorder prediction	193	221	-	-
	Gabi4981g00001	689	SMART	ultradead3	240	450	IPR014001	-
	Gabi4981g00001	689	SMART	helicmild6	493	574	IPR001650	-
	Gabi4981g00001	689	MobiDBLite	consensus disorder prediction	46	68	-	-
	Gabi4981g00001	689	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	252	435	IPR014001	-
	Gabi4981g00001	689	CDD	DEADc_MSS116	228	437	-	-
	Gabi4981g00001	689	Pfam	Helicase conserved C-terminal domain	469	574	IPR001650	-
	Gabi4981g00001	689	PANTHER	RNA HELICASE	179	619	-	-
	Gabi4981g00001	689	Pfam	DEAD/DEAH box helicase	246	423	IPR011545	GO:0003676\|GO:0005524
	Gabi4981g00001	689	CDD	SF2_C_DEAD	450	583	-	-
	Gabi4981g00001	689	Gene3D	-	190	437	IPR027417	-
	Gabi4981g00001	689	MobiDBLite	consensus disorder prediction	46	65	-	-
	Gabi4981g00001	689	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	298	589	IPR027417	-
	Gabi4981g00001	689	Gene3D	-	444	667	IPR027417	-
	Gabi4981g00001	689	MobiDBLite	consensus disorder prediction	154	183	-	-
	Gabi4981g00001	689	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	469	615	IPR001650	-
	Gabi4981g00001	689	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	221	249	IPR014014	GO:0003724
	Gabi4981g00001	689	MobiDBLite	consensus disorder prediction	87	221	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4981g00001	Gabi-Chr4981	12615	18798	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4981g00001	221	602	Eukaryotic Initiation Factors Gene Family	AT3G19760	26.884	8.59e-46	166

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4981g00001	-		-	gmx:100795739	1013.83