Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi497g00002 ATGGTTGTGAACGAGAGACCCTTGAAGAGGACAAAGAGAATCGTCGCCGCCGATCCCTATGATTTTCTTACCTTTCCGGCTGCCGCCGGCGAACCCTTTCGGACAAGTGTTCAATGCTTCCTCTCTAACCACGCGCGCCTCACCCTCCCTCCCTCGCTGTTTCCCTCCCTGGTGACGTGGCAGATCTTGTTCCGGGTAGGATCTGTCGTCGGCGGGCCGGATCTGTCGCCGGCGGTGGTCGCCTTAGACATCGTTGAGGAAGACGTAATTCAGTCTCGAAACTCGGTCTACTGCGACCAGTGCCGAGTCATTGGGTGGAGTGGGAATCCTGTGTGCCGAAAGCGATACCATTTCATAATAAGGGCTCATTCAAGTAATGCCATTGAACCTTATCAACGACCTTGTTCAAGATGTTCCAATCTTGTTCAATTATCTGAACAAAGGTGTAAATGGTGTAACAATGCAATTACTGCTGATGAAATAGAGAATTTGGTGTATCTTCAAATTGAGGATAACACTCATCTTCTACATGGTGTTGTTCATTCCAATGGTCATGGTCATCTGCTTACACTTAATGGAAGAGAAGGTGGTTCAAAGCTTCTATCTGGATCAGATATTTTGGGTTTCTGGGACGCGCTTTGTGCTACACTTTCTGTTAGGAAGGTTAGTGTGATGGATTTATCTAAAAAATTTGGGCTGGAATATCGATTGCTTCACGCAATCACGAAAGGGCACTCATGGTTTGGCAATTGGGGTTATGAATTTGGTACTGGAAGCTATGCTCTTACTCAAGATATTTACCAGAAAGCAGTGAATACCTTATCATGCATACCTTTGTCCTCTTTCATGTTCTGGGGTCGAGGGCCTCAAAACCACCTGCAGTCTGTGATATTTCTTTACCAATCTTTGGCAGATAATGAACTTTTAACAATTAAAGATCTCTTCTCATTTTTGTTGACATTGATTCGCGAATTCCGCAAGCCCCTGATGACAAAAACATCTGAACAACATGAATGCACCAGCACTTCTAATGTATCGTGTGCTTGGAGTAGTCGTGATGTTGAAGAGGTGCAAAAATCTTTCATCAAGGTGTTGCTTGCATCAGGTGCCTATAGTGAGGACAGATGGGTTAGCGGGCGTGCTCTTAAGGGTGCAGTGTTTAAAGGGGTTGCATCTCCTAAGCTTCTAAATTATAGTCTCAAGCACTTAGGAGGGAAATTAGCTGCCAATGGCATGGTAGTTCGTTCGCAATGCAACCCAATTTCTATGGCCGTGGAGTTCAGGCTTGAACCATTGAGTATTGTGCAAAAAGGATTTGGTACAAATTCAAGCTATCCATCTGAAGAGCAAGTGATATCTGATATGAGATTTTTATTTGATTCAATTATGAACCCTGATGAAATGGTTAGCAACGGACATCCGATTATGAAGAAACGGGTTGCGGATTCAGTAAGGAAGCTCCTAGACTGTAAGCAATTTATGAAGGATTACAAGCTTGAAAAAGTGGCAGTGGAAAAGCCTTCAGTCATTAGGTTGTGGTGCAATGTGGAGCTTTCTGATCAGCCTAAAGATGATCCATCCCCACCTCCAGAGCTAATCATTTTGCCTTTGAATGCTACTGTTGCTAACCTCAAGAGTGAAGCCACTAGTGCTTTTCAAGAAGTATATGTAATGTATAAGAGATTTCAAGCAGAGAAACTCCTAGGATATGGATCAGTCAGTGATTCGTTAACCCTAAAATTCCTTCTTGGAACAAGTGATTCTGTCCAAATTCAAGGTAAATGCCTGGCCAAATATAGGCTAAACCGATTTCGAATGGAAAGAGGAACAGAGACATGGGAAGTTGATTGCTCTTGTGGGACTAAGGATGATGATGGAGAAAAAATGTTAGCATGTGATACCTGTGGTGTTTGGCAGCATACCAGATGTGCTGGAATTGATAACTCTGACGCTATTCCTTCAAAGTTTGTGTGCTTGAAATGCCTCAACTCGTACCGGAAGGAAGCCAAAAAATTTCCAATCACTGATGTGGAAGCTAACAAGGCTTGTAAATTCAACACAACCTGCAGAGGTCAAGTAGCTGGAACTGATGATCCTGTAGGTGCTTATAACATGACTGTAAATTTTAGTGTACGTTGA 2139 0.4329 MVVNERPLKRTKRIVAADPYDFLTFPAAAGEPFRTSVQCFLSNHARLTLPPSLFPSLVTWQILFRVGSVVGGPDLSPAVVALDIVEEDVIQSRNSVYCDQCRVIGWSGNPVCRKRYHFIIRAHSSNAIEPYQRPCSRCSNLVQLSEQRCKWCNNAITADEIENLVYLQIEDNTHLLHGVVHSNGHGHLLTLNGREGGSKLLSGSDILGFWDALCATLSVRKVSVMDLSKKFGLEYRLLHAITKGHSWFGNWGYEFGTGSYALTQDIYQKAVNTLSCIPLSSFMFWGRGPQNHLQSVIFLYQSLADNELLTIKDLFSFLLTLIREFRKPLMTKTSEQHECTSTSNVSCAWSSRDVEEVQKSFIKVLLASGAYSEDRWVSGRALKGAVFKGVASPKLLNYSLKHLGGKLAANGMVVRSQCNPISMAVEFRLEPLSIVQKGFGTNSSYPSEEQVISDMRFLFDSIMNPDEMVSNGHPIMKKRVADSVRKLLDCKQFMKDYKLEKVAVEKPSVIRLWCNVELSDQPKDDPSPPPELIILPLNATVANLKSEATSAFQEVYVMYKRFQAEKLLGYGSVSDSLTLKFLLGTSDSVQIQGKCLAKYRLNRFRMERGTETWEVDCSCGTKDDDGEKMLACDTCGVWQHTRCAGIDNSDAIPSKFVCLKCLNSYRKEAKKFPITDVEANKACKFNTTCRGQVAGTDDPVGAYNMTVNFSVR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi497g00002 712 Pfam PHD-finger 617 663 IPR019787 -
Gabi497g00002 712 CDD PHD_MMD1_like 616 661 - -
Gabi497g00002 712 ProSitePatterns Zinc finger PHD-type signature. 617 661 IPR019786 -
Gabi497g00002 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 17 669 - -
Gabi497g00002 712 SMART PHD_3 616 662 IPR001965 -
Gabi497g00002 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 668 IPR013083 -
Gabi497g00002 712 SUPERFAMILY FYVE/PHD zinc finger 607 665 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi497g00002 Gabi-Chr497 131879 135863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi497g00002 76 661 PHD Transcription Factor Family AT5G22260 29.421 8.79e-87 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi497g00002 PHD 4.7e-09 CL0390