Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4978g00005 ATGCCTATTCTCTATACTTCTCCAACTATGACCAAGTGGTTTTCTGGTATGATGGGAGCAACAATAAGGTGTAAGGAAGCTTTTTCTTTGTGGGTTTTGGCTGGCAATGGCGGTTATGCAGTTGGGCTATTCATAAAAGCTATTGAGAGAGTTATTTTTGCTGAATTTACTTGCATTCTTGCACTAGGAGGGTCCATAATGGGAATAATTGCAGGAGCCATCAAAGGCCAGACCACAGAAGGTGGTTTTCTTGATGGGGCTGGCAAAGGAGCTGTCACAGGGGCCATTGCAGCACTAGAATTGCTAAACTTTGCTACTGTTGATGAGCCACTGTCCAAGGTTGCCCTGTTGAGGAGTTTATTAAATGGGAAGCTATTTATGGAATGGATATGTCCAGCTGTTGCACAAGCCTATGAGTGTCATATTAACACACAGGAAAGAACTTACATAGAAGTATCAGATACTTATGACGTTAGGGGAGTCAGAGTCACAGCGATGCCCCAGAATTTTATTCAAAAGCTTCCTGTTCAGAAATTCAACTATAGCAAAATGTTGAAATTATACCATGAATCATGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGGAGAATTTGTCAGGATACTCCCAAAATGTGGCCACTTCTTTCACTTGGACTGCATAGATAAATGGCTAGTCCAACAAGGATCATGCCCCATGTGTAGAACTTATGTTCCACATTTATGA 726 0.416 MPILYTSPTMTKWFSGMMGATIRCKEAFSLWVLAGNGGYAVGLFIKAIERVIFAEFTCILALGGSIMGIIAGAIKGQTTEGGFLDGAGKGAVTGAIAALELLNFATVDEPLSKVALLRSLLNGKLFMEWICPAVAQAYECHINTQERTYIEVSDTYDVRGVRVTAMPQNFIQKLPVQKFNYSKMLKLYHESCCSICFQDFEDGEFVRILPKCGHFFHLDCIDKWLVQQGSCPMCRTYVPHL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4978g00005 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 240 IPR013083 -
Gabi4978g00005 241 SUPERFAMILY RING/U-box 185 239 - -
Gabi4978g00005 241 SMART ring_2 193 234 IPR001841 -
Gabi4978g00005 241 Pfam Ring finger domain 193 235 IPR001841 -
Gabi4978g00005 241 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 43 236 IPR044523 -
Gabi4978g00005 241 ProSiteProfiles Zinc finger RING-type profile. 193 235 IPR001841 -
Gabi4978g00005 241 CDD RING-H2_EL5-like 192 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4978g00005 Gabi-Chr4978 83538 85366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4978g00005 54 238 C3H Transcription Factor Family AT5G66070 35.897 7.65e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4978g00005 - K19041 gmx:100799697 333.954