Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4977g00008 ATGATTGCAAAGGAAAACCCAGTAGGTACTGAACTGGCAATGAATAATGCCAGTGGGGAAGAGGAAATAGAATATGCCTGTGAACCATACATAGGGCTAGAATTTGACTCAGCAGATGATGCGCTTAAGTTTTACACATCCTATGCAAAGCGAACTGGATTTAAAGTTCGGATTGGTCAGCTGTATCGATCAAGAACTAATGGGTCGGTTTCTTCTCGAAGATTCGTGTGCTCAAAGGAGGGTTACCAGCTCAATTCAAGAACAGGTTGTCCAGCATTTGTAAGGGTACAAAGACGTGAATCTGGAAAGTGGGTTATTGATCATTTCCTGAAGGGCCACAATCACGATCTTGTAGCGGAAAGTGAAAATTGCACTCCAACTTTGCAGCAGAAAGGTGCTACAGATATCAATTATTCTGTTAATGCATCTCGCAGGCAAAGGAAGAAATTGCTTGAAGAAGCCGACGATGAACCATCTTGTCCCTTTGGCATTATTAATTTCAAACGTCTAAGAAAAGAAGGAGACCAAGGAAAGTCCAGGATTGAACCATATGTAGGTCAAGTGTTTAGTTCAGCTAATGAAGCCTACCAATTTTATCATGCATATGCAGCATGTGTGGGTTTTGGTATTCGATTTGGTCAATTGTTTCGTTCTAAGAATGATGGGTTGATCACTTCCCGCCGATTTGTGTGCTCGAAGGAAGGGTTCCAGCACCCTTCAAGAGTTGGTTGTGGGACTTATTTGAGAATAAAGAGACAACCATCAGGAAAGTGGGTAGTGGACCGTCTCCAAAAAGAACATAATCATAATCTGGACCCTGAAAAGGAGGGTAGGGAAAAAAGTCTTCCCGCTTCTAATATTTTGAGTGAGGAGGTAGATGCTGGATTGTTAAACGGTAAATTGTTTCGGATAGATAACTACCCTGTCCCAAGAGTAGATAGACAAAATCACATTAAAAGTGATTGGTACACTCTGCTTTTTGAATATTTTCAATCAAGACAAGTTGAAGATACAGGATTCTTTTATGCTGTGGAAGTTGATAATGGTAAATGCATGAGCATATTTTGGGCTGATGGCAGATCTAGATTTTCATGTAGTCAGTTCGGTGATGTCCTTGTTTTAGACACGTTTTATCGAAAAAGTGTCTATTTGGTACCTTTTGCTACTTTTGTTGGCATTAACCATCACAAGCAACCTGTGCTTCTTGGATGTGCTCTAATTGCTGATGAATCTGAAGAATCTTTCACCTGGTTGTTTCGGACCTGGCTGAGGGCAACGTGTGGCCAGCAGCCTCTGTCAATAATAGCTGATCAAGACATTGCAATCCAGAAGGCAATAGCAAAAGTCTTTCCAGCAACCCATCATCGATTTTCGTTGTGGGAAATTAAGGCAAAGGAACAAGAGAATGTGGGTCTGATGGGTAATGGATTTTCAAATGATTTTGAAAAAAGCATTTACCAGAGTCAGACAGTTAATGAATTTGACACCGCATGGAATGCCCTGCTCAACAAGTATGGATTGAAGGATAATGCTTGGCTGAAAGAAATGTATGAGAAGCGTGCGTCTTGGGTTCCATTTTATTTAAGGGGCACTTTTTTTGCTGGGATTCCCATCAATGAAAGTGTCGATTCATTCTTTGGTGCACTTTTAAATGCCCAGACTCCTATCGTGGAGTTCATTTCACGGTATGAAAGAGGTCTTGAGCGACGCCGTGAGGAAGAAAGAAAAGAAGATTTTAATACCTCCAATTTTCAACCCATGTTGCAAACAAAAGAACCAGTAGAAGAACAATGTAGAAGGCTTTACACTCTTACCATATTCAAAGTATTTCAGAAAGAGCTTTTGCAATGTTATAGTTATCTTGGGTTTAAAATTTACGAAGAAGGTGGCCTTAGCAGATATTTGGTGCGTAGGTGTGGAAACGATATGGAGAAGCATGTAGTTACATTTAGTGTGTCCAATCTAAGCATTAGTTGTAGCTGTCAGATGTTTGAATATGAAGGAATTCTTTGTAGACATGCTTTGAGGGTTTTTCAAATATTGGAATTAAGAGAAGTTCCATCTCGCTACATCTTGCACCGATGGACAAAAAATGCAGACGATGGTGTTTTTCCTGACATTGAAGCCTGGAGTAGCTCTCAGGAACTCAGGAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATAGATGCTGGGGCAACATCTATTGAAAAGTACAAACTTGCCTGCGAGATTTTGCGTGAGGGTGGGAGGAAGCTATGTTGGCCCAGGTAG 2283 0.4069 MIAKENPVGTELAMNNASGEEEIEYACEPYIGLEFDSADDALKFYTSYAKRTGFKVRIGQLYRSRTNGSVSSRRFVCSKEGYQLNSRTGCPAFVRVQRRESGKWVIDHFLKGHNHDLVAESENCTPTLQQKGATDINYSVNASRRQRKKLLEEADDEPSCPFGIINFKRLRKEGDQGKSRIEPYVGQVFSSANEAYQFYHAYAACVGFGIRFGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGTYLRIKRQPSGKWVVDRLQKEHNHNLDPEKEGREKSLPASNILSEEVDAGLLNGKLFRIDNYPVPRVDRQNHIKSDWYTLLFEYFQSRQVEDTGFFYAVEVDNGKCMSIFWADGRSRFSCSQFGDVLVLDTFYRKSVYLVPFATFVGINHHKQPVLLGCALIADESEESFTWLFRTWLRATCGQQPLSIIADQDIAIQKAIAKVFPATHHRFSLWEIKAKEQENVGLMGNGFSNDFEKSIYQSQTVNEFDTAWNALLNKYGLKDNAWLKEMYEKRASWVPFYLRGTFFAGIPINESVDSFFGALLNAQTPIVEFISRYERGLERRREEERKEDFNTSNFQPMLQTKEPVEEQCRRLYTLTIFKVFQKELLQCYSYLGFKIYEEGGLSRYLVRRCGNDMEKHVVTFSVSNLSISCSCQMFEYEGILCRHALRVFQILELREVPSRYILHRWTKNADDGVFPDIEAWSSSQELRNLMLWSLRETASKYIDAGATSIEKYKLACEILREGGRKLCWPR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4977g00008 760 Pfam MULE transposase domain 371 464 IPR018289 -
Gabi4977g00008 760 ProSiteProfiles Zinc finger SWIM-type profile. 650 682 IPR007527 GO:0008270
Gabi4977g00008 760 SMART 26again6 657 684 IPR006564 GO:0008270
Gabi4977g00008 760 Pfam SWIM zinc finger 645 679 IPR007527 GO:0008270
Gabi4977g00008 760 Pfam FAR1 DNA-binding domain 197 272 IPR004330 -
Gabi4977g00008 760 Pfam FAR1 DNA-binding domain 43 118 IPR004330 -
Gabi4977g00008 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 18 128 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4977g00008 Gabi-Chr4977 84181 88256 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi4977g00008 MULE 7.2e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4977g00008 - - gmx:100816656 1288.48