Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4977g00002 ATGGAAAGTGGAGGAAATTTTGGTAGTAATGGCGTTCAAATTTATGGGAGTGAAAATATTAACCCCGTTAACCCTTCCATGCATAGATCAGGCCCTCCTTTGACATCTATAGATAGGTTCTTATGGGGCCAACAGAACCACTTCCCTCAGCAGCAACATGTAGAGAACGTTGCAAGGAACAACGATGCAAGTGTCTTTACTAATGAGTTCTTCAGTTTTTCCTGCTCTGGTGGTTCATCCCATAGGTTTCTATGGCCTAACACTCAAGAATCAAGCTTTGTTGGTGGGAACTTAGCAAATGAAGAGGCTTTGACGTGGACAAACATCAACCAAACCCCCACATTGTTCCTGAAAGATGTCCAAAAGAATGCAAAATTGGTGGGAAGGAGAACTAAGAAAGGGTCTGTTGTGCCTTTGATCAAAGGACAGTGGTCATCTGAAGAAGACAGGAAACTGAAAAGTTTGGTGAAGAGATATGGTGAAAGAAAATGGGCTCAAATTGCTGAGAAATTGGAAGGAAGGGTTGGCAAGCAGTGTCGAGAGAGATGGAACAATCATTTGCGTCCTCATGTTAAGAAAGATAGCTGGAGTGAAGAAGAAGAGATGATATTAGTAGATAAACATTCTAAGATGGGAAACCGTTGGGCTGAGATAACAAAGTACATTCCAGGGAGAACAGAGAATGCTATAAAGAACCATTGGAATGCCACTAAAAGGAGGCAGAATTCAACGAGAAAGAACAAGAAATCTAATGGAAAACCACACTCCTCTATACTTGAAGACTATGTCAGAAGCAAGAACACTTCCATGAACCCCACAAAAGGCATCATCACTGAAACAGCTACAATAACCACCAAGCTCTCTAGCTCCCAAGTAACACTCTCTGAGGACCCTGCAAATAACGAATTAAACCTTGTGTTATCTGAACCCTCTCAATCTGTTGCCAATGAGCTACTCTTCATGGAAGAAATTTTCACTGAGAATCAGAATCAGCATATTGTTGATGATGTGAATCAATTTGGGTTTGACTATTCCATCCAGTACCCAGATATCATGCACTTGGATGATAGTTTATTCCTCCGCAGTTGA 1089 0.4132 MESGGNFGSNGVQIYGSENINPVNPSMHRSGPPLTSIDRFLWGQQNHFPQQQHVENVARNNDASVFTNEFFSFSCSGGSSHRFLWPNTQESSFVGGNLANEEALTWTNINQTPTLFLKDVQKNAKLVGRRTKKGSVVPLIKGQWSSEEDRKLKSLVKRYGERKWAQIAEKLEGRVGKQCRERWNNHLRPHVKKDSWSEEEEMILVDKHSKMGNRWAEITKYIPGRTENAIKNHWNATKRRQNSTRKNKKSNGKPHSSILEDYVRSKNTSMNPTKGIITETATITTKLSSSQVTLSEDPANNELNLVLSEPSQSVANELLFMEEIFTENQNQHIVDDVNQFGFDYSIQYPDIMHLDDSLFLRS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4977g00002 362 MobiDBLite consensus disorder prediction 238 252 - -
Gabi4977g00002 362 ProSiteProfiles Myb-like domain profile. 188 238 IPR001005 -
Gabi4977g00002 362 CDD SANT 195 238 IPR001005 -
Gabi4977g00002 362 SUPERFAMILY Homeodomain-like 138 234 IPR009057 -
Gabi4977g00002 362 PANTHER MYB PROTEIN-RELATED 114 254 - -
Gabi4977g00002 362 FunFam Transcriptional activator Myb isoform A 140 193 - -
Gabi4977g00002 362 Pfam Myb-like DNA-binding domain 144 201 - -
Gabi4977g00002 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 192 242 IPR017930 -
Gabi4977g00002 362 MobiDBLite consensus disorder prediction 235 258 - -
Gabi4977g00002 362 SMART sant 192 240 IPR001005 -
Gabi4977g00002 362 SMART sant 140 189 IPR001005 -
Gabi4977g00002 362 CDD SANT 144 187 IPR001005 -
Gabi4977g00002 362 ProSiteProfiles Myb-like domain profile. 141 187 IPR001005 -
Gabi4977g00002 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 191 IPR017930 -
Gabi4977g00002 362 Gene3D - 195 260 - -
Gabi4977g00002 362 Gene3D - 140 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4977g00002 Gabi-Chr4977 14025 16199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4977g00002 27 265 MYB Transcription Factor Family AT5G58850 46.000 5.99e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4977g00002 Myb_DNA-bind_6 2.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4977g00002 K09422 - aprc:113874412 403.675