Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4966g00008 ATGGGTGATAATAGAGGCAAAGTACTCTCAGACAGAGAAGACTTTAAGTACAATTTCACAGCTGCAACTGCAAGTGGAACCTCTTCTCAGGATGGGTTCATTAAAGAGCAAGATCGATTGCTTCCAATAGCTAATGTGGGGAGGATTATGAAGCAAATCTTGCCTCCTAACGCCAAAATCTCAAAGGAAGCTAAAGAAACCATGCAAGAATGTGTGTCAGAGTTTATTAGCTTTGTTACCGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTTAATGGAGATGATATTTGCTGGGCCTTGGCTACCCTAGGGTTTGATGACTACTCTGAGCCACTCAAAAGGTATTTGTATAAGTATAGGGAATTGGAGGGTGAGAAAGCTAATCAAAATAAGGCTAACAACACTGATGAAATCAATATTGAAACATATAATAATTATTGA 453 0.4018 MGDNRGKVLSDREDFKYNFTAATASGTSSQDGFIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYSEPLKRYLYKYRELEGEKANQNKANNTDEINIETYNNY 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4966g00008 150 Gene3D Histone, subunit A 29 148 IPR009072 GO:0046982
Gabi4966g00008 150 FunFam Nuclear transcription factor Y subunit B-3 29 149 - -
Gabi4966g00008 150 ProSitePatterns NF-YB/HAP3 subunit signature. 71 87 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi4966g00008 150 SUPERFAMILY Histone-fold 37 145 IPR009072 GO:0046982
Gabi4966g00008 150 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 138 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi4966g00008 150 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
Gabi4966g00008 150 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Gabi4966g00008 150 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Gabi4966g00008 150 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4966g00008 Gabi-Chr4966 77734 78317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4966g00008 17 134 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.182 8.79e-64 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi4966g00008 CBFD_NFYB_HMF 8.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4966g00008 K08065 - gmx:100796514 252.677