Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4966g00007 ATGTCAAATATTTCAGGTGATGAAGGAAGTTTCTCCTCAGCAAACACTGGGGAAGAAGTTTATGAAGAAAACGAGCAGCAACAACTACAAAATCTACCACATGGCTCAAGTTCAGGACCTTCTGGTGCTTGCAACAGCACTAACTCCACTAATCAACAACAACAACAGGGAACAAAGAAGAAAAGAAACCTTCCAGGAACCCCAGATCCGAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGTAGAGGTCACAATCTTCCATGGAAACTGAAGCAAAGAGCAACCACTGAGGTGGTGAAACGGGTCTATGTGTGTCCTGAGCCATCATGCGTGCATCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGGATTAAAAAACATTACAGCAGAAAACATGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTCCAATCTGATTGGAAGGCCCACCAGAAAACCTGTGGTACCAGGGAATACAAATGTGATTGTGGAACCATATTTTCAAGGAGAGATAGTTTCATCACACACAGAGCATTTTGTGACGCATTAACTGAAGTAAACAACCGAGTGAACCAGGGATTAACGAGTGGCATGACACCAAACTTGCTACAAAATGAAATGCCGGATGTTATGTCAACAATGCCTCTAAGCACAAGTTCCAACACTGTATCAGAATTCAGCAACTACGACCCAAAGAACACACTCAGAAACCTCACCCAAGAACTTGTCCCAAGTCCATTCAAGTCCATAAGCATGGGTGGGGGCATGTTCTCTACCACTTCAGGCACACTTTTTGGTGGTCCAAAAAACATGTCTCCATCTTCTTCCAACCTTCAACTCAGTTCCAACAACTCCATTGGTTTCAATTACTTCCAAGACAGCAAAAACGGTGGCCTAATTTCTGGCTCAGCTCACATGTCAGCAACAGCTTTATTACAGAAAGCAGCACAAATGGGTGCCACTGCAAGCAATAGCATTAACTCTCCCATGATGCATAAAAGCTTTGTTAATAGCATTGCTTCTCCTAACCATGTCTCTTCCCCTAGACCACCATATTCTGTTGCTATACAACAGCTTAATTCTTCTTCCTATGACCACTTTAATCCACACCCTGACCAATCTCACATGGCTGGGGTTAGTGGTGTTGGAGCCTTCACCAATAACCAATTATTTCAGAAAGGACAACAAGACATATCACTAATGTTTGATTCTAACACTACCGTTTCAACAATGAATGATATGGGAATGTTCAGTCCAATGTTCACGGGAAGTGACAGCAACATAGGATTGATGAAGAATGTGGAACAAGAGTTTGGTACTAGCTCCAAGGTTCATGACTTCTTGGGGGTTGGGGCTTCAACTTCAAGGGCACCAAATTTGCTTGAACCCCAGAAACAACAACAACAAAGATTGGAGTTAGAAGCATTCACCCACCAGAGTTTGCAAGTCATGAATCACTTTCACAACCACCTTCCACATGGAGATTGA 1584 0.4299 MSNISGDEGSFSSANTGEEVYEENEQQQLQNLPHGSSSGPSGACNSTNSTNQQQQQGTKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRATTEVVKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEVNNRVNQGLTSGMTPNLLQNEMPDVMSTMPLSTSSNTVSEFSNYDPKNTLRNLTQELVPSPFKSISMGGGMFSTTSGTLFGGPKNMSPSSSNLQLSSNNSIGFNYFQDSKNGGLISGSAHMSATALLQKAAQMGATASNSINSPMMHKSFVNSIASPNHVSSPRPPYSVAIQQLNSSSYDHFNPHPDQSHMAGVSGVGAFTNNQLFQKGQQDISLMFDSNTTVSTMNDMGMFSPMFTGSDSNIGLMKNVEQEFGTSSKVHDFLGVGASTSRAPNLLEPQKQQQQRLELEAFTHQSLQVMNHFHNHLPHGD 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4966g00007 527 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Gabi4966g00007 527 Gene3D Classic Zinc Finger 143 221 - -
Gabi4966g00007 527 SMART c2h2final6 164 184 IPR013087 -
Gabi4966g00007 527 SMART c2h2final6 129 159 IPR013087 -
Gabi4966g00007 527 SMART c2h2final6 88 110 IPR013087 -
Gabi4966g00007 527 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Gabi4966g00007 527 Gene3D Classic Zinc Finger 88 132 - -
Gabi4966g00007 527 FunFam protein indeterminate-domain 12-like 67 135 - -
Gabi4966g00007 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 501 IPR031140 -
Gabi4966g00007 527 MobiDBLite consensus disorder prediction 1 73 - -
Gabi4966g00007 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Gabi4966g00007 527 MobiDBLite consensus disorder prediction 1 62 - -
Gabi4966g00007 527 Pfam Zinc finger, C2H2 type 88 110 IPR013087 -
Gabi4966g00007 527 SUPERFAMILY beta-beta-alpha zinc fingers 87 185 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4966g00007 Gabi-Chr4966 43959 47467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4966g00007 59 355 IDZ Gene Family AT3G50700 55.937 8.95e-113 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4966g00007 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4966g00007 - - gmx:100782774 702.205