Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4966g00004 ATGGACTTTTACGGTCGGAGCTCCGCGAGGAATGGATCTAACCCGGTAAATCAACCCGAATGGCGCTCACCGGGCGCCGACACTGGTCTCGAAGAATCGATGTGGCATTTAACGCTGGGTGGCGGCGAATCTTACCCGGAGCGACCCGGTGTACCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCCCGTGATCGTGCTGCGGTTGCTGCGGCAGTAAGAGCTACAGGCGATTACCCAGAACGGGTGGGGGAACCTGCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCCAGACATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATGCCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCTTCCGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACGGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCACGAGCTTGAGAGTGGCTAGGCCTCCTATATTGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTACTGGATGGAGTCCTTATTCGGCACCTGTAAGTCCAGTGTTATCTCCTGGCGCTCAACCTTCTGTTGGGGCTACTTCTCTATATGGAGTGACCCAGTTATCGTCATCAACATCAGCTTTTGCTGGACCATATACTCCTCTTGCCTCTTCTATTGGCCCTTCAGGAAGCAACCAGAAGGAACAAGTATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGACCAGGTCGTGACACGGCCACTTCTTAGCTCCATTGGTCTTCCTTTACGTACGGGCACACCGCCAGTACTTCCTATTTATTAG 1053 0.4938 MDFYGRSSARNGSNPVNQPEWRSPGADTGLEESMWHLTLGGGESYPERPGVPNCVYYMRTGFCGYGGRCRYNHPRDRAAVAAAVRATGDYPERVGEPACQYYLKTGTCKFGASCKFHHPRHGGGYLSQAPLNIYGCPLRPGEKECSYYLKTGQCKFGITCKFHHPQPSGTSLPASAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPILPGSYVQGAYGPVLLSPGVVPFTGWSPYSAPVSPVLSPGAQPSVGATSLYGVTQLSSSTSAFAGPYTPLASSIGPSGSNQKEQVFPERPGEPECQYYLRTGDCKFGLACRYHHPRDQVVTRPLLSSIGLPLRTGTPPVLPIY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4966g00004 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Gabi4966g00004 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Gabi4966g00004 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Gabi4966g00004 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Gabi4966g00004 350 SUPERFAMILY CCCH zinc finger 97 121 IPR036855 GO:0046872
Gabi4966g00004 350 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Gabi4966g00004 350 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Gabi4966g00004 350 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4966g00004 350 PANTHER PROTEIN PHOSPHATASE RELATED 38 344 - -
Gabi4966g00004 350 MobiDBLite consensus disorder prediction 7 21 - -
Gabi4966g00004 350 Gene3D - 91 176 - -
Gabi4966g00004 350 Gene3D - 43 88 - -
Gabi4966g00004 350 Gene3D - 285 332 - -
Gabi4966g00004 350 SUPERFAMILY CCCH zinc finger 142 167 IPR036855 GO:0046872
Gabi4966g00004 350 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Gabi4966g00004 350 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Gabi4966g00004 350 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Gabi4966g00004 350 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Gabi4966g00004 350 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Gabi4966g00004 350 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Gabi4966g00004 350 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Gabi4966g00004 350 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4966g00004 Gabi-Chr4966 22434 25938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4966g00004 20 345 C2H2 Transcription Factor Family AT5G18550 53.333 4.34e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4966g00004 zf-CCCH 7.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4966g00004 - - gmx:100805017 662.914