Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4966g00002 ATGGACTTTTACGGTCGGAGCTCCGCGAGGAATGGATCTAACCCGGTAAATCAACCCGAATGGCGCTCACCGGGCGCCGACACTGGTCTCGAAGAATCGATGTGGCATTTAACGCTGGGTGGCGGCGAATCTTACCCGGAGCGACCCGGTGTACCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCCCGTGATCGTGCTGCGGTTGCTGCGGCAGTAAGAGCTACAGGCGATTACCCAGAACGGGTGGGGGAACCTGCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCCAGACATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATGCCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCTTCCGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACGGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCACGAGCTTGAGAGTGGCTAGGCCTCCTATATTGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTACTGGATGGAGTCCTTATTCGGCACCTGTAAGTCCAGTGTTATCTCCTGGCGCTCAACCTTCTGTTGGGGCTACTTCTCTATATGGAGTGACCCAGTTATCGTCATCAACATCAGCTTTTGCTGGACCATATACTCCTCTTGCCTCTTCTATTGGCCCTTCAGGAAGCAACCAGAAGGAACAAGTATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGACCAGGTCGTGACACGGCCACTTCTTAGCTCCATTGGTCTTCCTTTACGTACGGGGGTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAGTTTGGCTCCACGTGCAAATTTGACCATCCTCTGGGGACTATGAGGTACAGTCCATCAGCGTCTTCTCTCATTGAGATGCCAGTTACTCCATACCCTGTTGGGTCTTTGCTGTCTAACCTAGCTCCTCCAACAACATCTTCAGAGCTTCGGCCTGAACTGATGTCGGGGTCCAAAACGGAATCCTTTTCAGCTAGAATGCCTTCTTCTTCTGGTACTTCTGTTGGTTTAATCTTCTCACAAGGTGGGTCTGTCTCGCTCTCTGATGTGCAACTCTCAAGTCAGACTTCTGCCCCTCTAAGCAGTAGCAGAAGCACCAGACAAAGTGCTGAGATACGCTGA 1407 0.4904 MDFYGRSSARNGSNPVNQPEWRSPGADTGLEESMWHLTLGGGESYPERPGVPNCVYYMRTGFCGYGGRCRYNHPRDRAAVAAAVRATGDYPERVGEPACQYYLKTGTCKFGASCKFHHPRHGGGYLSQAPLNIYGCPLRPGEKECSYYLKTGQCKFGITCKFHHPQPSGTSLPASAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPILPGSYVQGAYGPVLLSPGVVPFTGWSPYSAPVSPVLSPGAQPSVGATSLYGVTQLSSSTSAFAGPYTPLASSIGPSGSNQKEQVFPERPGEPECQYYLRTGDCKFGLACRYHHPRDQVVTRPLLSSIGLPLRTGVQPCAFYLQNGHCKFGSTCKFDHPLGTMRYSPSASSLIEMPVTPYPVGSLLSNLAPPTTSSELRPELMSGSKTESFSARMPSSSGTSVGLIFSQGGSVSLSDVQLSSQTSAPLSSSRSTRQSAEIR 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4966g00002 468 SUPERFAMILY CCCH zinc finger 142 167 IPR036855 GO:0046872
Gabi4966g00002 468 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Gabi4966g00002 468 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Gabi4966g00002 468 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Gabi4966g00002 468 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Gabi4966g00002 468 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Gabi4966g00002 468 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Gabi4966g00002 468 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Gabi4966g00002 468 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Gabi4966g00002 468 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4966g00002 468 PANTHER PROTEIN PHOSPHATASE RELATED 39 388 - -
Gabi4966g00002 468 MobiDBLite consensus disorder prediction 398 428 - -
Gabi4966g00002 468 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Gabi4966g00002 468 SUPERFAMILY CCCH zinc finger 97 121 IPR036855 GO:0046872
Gabi4966g00002 468 MobiDBLite consensus disorder prediction 7 21 - -
Gabi4966g00002 468 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Gabi4966g00002 468 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Gabi4966g00002 468 Gene3D - 91 176 - -
Gabi4966g00002 468 Gene3D - 295 377 - -
Gabi4966g00002 468 Gene3D - 42 88 - -
Gabi4966g00002 468 MobiDBLite consensus disorder prediction 445 468 - -
Gabi4966g00002 468 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Gabi4966g00002 468 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Gabi4966g00002 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Gabi4966g00002 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Gabi4966g00002 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Gabi4966g00002 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 343 366 IPR000571 GO:0046872
Gabi4966g00002 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4966g00002 Gabi-Chr4966 21791 25938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4966g00002 20 432 C2H2 Transcription Factor Family AT5G18550 51.382 2.38e-134 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4966g00002 zf-CCCH 1.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4966g00002 - - gmx:100812475 838.95