Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4966g00001 ATGGACTTTTACGGTCGGAGCTCCGCGAGGAATGGATCTAACCCGGTAAATCAACCCGAATGGCGCTCACCGGGCGCCGACACTGGTCTCGAAGAATCGATGTGGCATTTAACGCTGGGTGGCGGCGAATCTTACCCGGAGCGACCCGGTGTACCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCCCGTGATCGTGCTGCGGTTGCTGCGGCAGTAAGAGCTACAGGCGATTACCCAGAACGGGTGGGGGAACCTGCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCCAGACATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATGCCCGTTACGTCAACCTTCCGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACGGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCACGAGCTTGAGAGTGGCTAGGCCTCCTATATTGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTACTGGATGGAGTCCTTATTCGGCACCTGTAAGTCCAGTGTTATCTCCTGGCGCTCAACCTTCTGTTGGGGCTACTTCTCTATATGGAGTGACCCAGTTATCGTCATCAACATCAGCTTTTGCTGGACCATATACTCCTCTTGCCTCTTCTATTGGCCCTTCAGGAAGCAACCAGAAGGAACAAGTATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGACCAGGTCGTGACACGGCCACTTCTTAGCTCCATTGGTCTTCCTTTACGTACGGGGGTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAGTTTGGCTCCACGTGCAAATTTGACCATCCTCTGGGGACTATGAGGTACAGTCCATCAGCGTCTTCTCTCATTGAGATGCCAGTTACTCCATACCCTGTTGGGTCTTTGCTGTCTAACCTAGCTCCTCCAACAACATCTTCAGAGCTTCGGCCTGAACTGATGTCGGGGTCCAAAACGGAATCCTTTTCAGCTAGAATGCCTTCTTCTTCTGGTACTTCTGTTGGTTTAATCTTCTCACAAGGTGGGTCTGTCTCGCTCTCTGATGTGCAACTCTCAAGTCAGACTTCTGCCCCTCTAAGCAGTAGCAGAAGCACCAGACAAAGTGCTGAGATACGCTGA 1329 0.4944 MDFYGRSSARNGSNPVNQPEWRSPGADTGLEESMWHLTLGGGESYPERPGVPNCVYYMRTGFCGYGGRCRYNHPRDRAAVAAAVRATGDYPERVGEPACQYYLKTGTCKFGASCKFHHPRHGGGYLSQAPLNIYGCPLRQPSGTSLPASAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPILPGSYVQGAYGPVLLSPGVVPFTGWSPYSAPVSPVLSPGAQPSVGATSLYGVTQLSSSTSAFAGPYTPLASSIGPSGSNQKEQVFPERPGEPECQYYLRTGDCKFGLACRYHHPRDQVVTRPLLSSIGLPLRTGVQPCAFYLQNGHCKFGSTCKFDHPLGTMRYSPSASSLIEMPVTPYPVGSLLSNLAPPTTSSELRPELMSGSKTESFSARMPSSSGTSVGLIFSQGGSVSLSDVQLSSQTSAPLSSSRSTRQSAEIR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4966g00001 442 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Gabi4966g00001 442 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Gabi4966g00001 442 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Gabi4966g00001 442 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Gabi4966g00001 442 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Gabi4966g00001 442 Gene3D - 269 351 - -
Gabi4966g00001 442 Gene3D - 47 126 - -
Gabi4966g00001 442 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Gabi4966g00001 442 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4966g00001 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Gabi4966g00001 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 317 340 IPR000571 GO:0046872
Gabi4966g00001 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Gabi4966g00001 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
Gabi4966g00001 442 MobiDBLite consensus disorder prediction 419 442 - -
Gabi4966g00001 442 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Gabi4966g00001 442 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Gabi4966g00001 442 MobiDBLite consensus disorder prediction 7 21 - -
Gabi4966g00001 442 SUPERFAMILY CCCH zinc finger 316 345 IPR036855 GO:0046872
Gabi4966g00001 442 SUPERFAMILY CCCH zinc finger 274 299 IPR036855 GO:0046872
Gabi4966g00001 442 SUPERFAMILY CCCH zinc finger 97 121 IPR036855 GO:0046872
Gabi4966g00001 442 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Gabi4966g00001 442 PANTHER PROTEIN PHOSPHATASE RELATED 151 362 - -
Gabi4966g00001 442 MobiDBLite consensus disorder prediction 372 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4966g00001 Gabi-Chr4966 21791 25938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4966g00001 20 406 C2H2 Transcription Factor Family AT5G18550 46.774 1.12e-109 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4966g00001 zf-CCCH 1.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4966g00001 - - gmx:100812475 765.377