Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4965g00006 ATGGCTTCCCCTAATTCATGTCTTCAATCTGCTCCTATTGATTATGAAACTAAACACATCTCAAAATCAGTACCCCAGCAAAGTGTCCTAGACATTGAGGTCACCACACTTGAAATGGAAGCTATTAGAGCTCCAAAAAAGAATGGAGGAGAAGCTAAGACAGAAGAGGTGGGTATCTTTCTGACATGGAAGGATCTATGGGTGACTGCTTCAAAGGGAAAGAATGGAAGCAAAACAATTCTTGAGGGTCTAACTGGTTATGCCAAGCCAGGGCAGCTCTTGGCCATAATGGGTCCTTCTGGTTGTGGCAAGTCTACACTACTTGATACTTTAGCAGGGAGATTAGGTTCAAACATAAGGCAAACGGGGGAGATTCTGATCAATGGTCGCAAACAAGCACTTGCTTATGGAACCTCGGCATATGTCACACAAGATGATACATTATTGACAACCTTAACTGTTAAAGAAGCGGTGCACTATTCAGCTCAACTCCAATTACCTGACTCCATGTCCAAGGCAGAGAAAAAAGAGATAGCAGACTTTACAATAAGAGAAATGGGTTTGCAAGATGCCATTAACACAAGAATTGGAGGGTGGGGTTCTAAAGGCATTAGTGGGGGTCAAAAGAGGAGAGTGGGCATATGCATCGAGATCCTAACACGTCCTAAACTTCTCTTTCTTGATGAACCAACTAGTGGACTTGATAGTGCAGCTTCCTATTATGTCATGAGAAGAATTGCTACCCTGGCTCAAAAAGATGGCATTCAGAGGACTGTTATTGCATCAATCCATCAGCCTAGTAGTGAAGTTTTTCAACTCTTCCATAACCTTTGTCTTCTGTCTTCTGGTAGAACAGTTTACTTTGGACCTGCTTCTGCTGCAACTGAGGACATTGAAGTGGGTTTAGCAGGGACTGGAACAATACCCACAGAAGAAGCAATCCGTATTCTTGTGACATCATATAAATCATCTGAAAGGAACCAAGAAGTTCAAAACGAAGTAGCAGTACTATCTGAAAAGGAAACCAGTTCAATTGACAAGAAGAGAGGACACGCAGGCTTCCTTAATCAGTGCTTAGTTCTTATAAAGAGATCGTCCGTGAACATGTTTCGTGATCTAGGCTATTACTGGTTACGCCTAGCCATATATGTAGCATTGGCTTTAAGTTTAGGCACTGTTTTCTATAATTTGGATACCAGTAATGGCTCAATTAAGGACAGAGGTTCACTTCTTGCATTTGTGTCTGCATTCCTAACTTTTATGACCATCGGTGGATTCCCTTCCTTTGTGGAAGACATGAAGGTATTTCAACGAGAAAGACAAAATGGGCATTATGGTGTCACTGCGTTTGTAATTGGGAACACCTTTTCCTCTGTCCCATACTTGTTGTTGGTTACCCTGATTCCTGGAGTTATAACTTATTTCCTTGCTGGTCTTCAGAAAGGATACGAGCACATTTTGTACTTCTTGTGTGTTATATTTTCTAGTTTGATGTTAGTGGAGAGTCTTATGATGATAGTTGCTACTGTTGTTCCCAACTTTCTAATGGGTATCATAACTGGTGCTGGAATTCAAGGAATCATGCTTTTAATTAGCGGGTTCTTTAGATTGCCACATGATCTTCCAAGGCCATTTTGGAGATACCCATCACACTATGTTGCCTTCCATACATATGCCTTTCAAGGACTGCTCAAGAATGAGTTTGAAGGACTAAGGTTTGCTACAAATCAAGGCTCACACAATTACATTAGTGGTGAAGAGATTTTAAGAAATACATGGCAAGTTGACATGAGTATATCAAAATGGGTTGATCTTGCAATCCTTGTGGGGATGATTGTTCTGTATCGTGTTCTGTTTTTCATTATCATCAAGACTATTGAGAAGGTGAAGCCTGTGGTTGTATCACTATCATGCATGTCAGGGTCTCCCAAGGGAACAATACAGATCGTGGAGAACCCCAATGCCACTCCTTTACAAGGAGAGGTTTTATAA 1992 0.4116 MASPNSCLQSAPIDYETKHISKSVPQQSVLDIEVTTLEMEAIRAPKKNGGEAKTEEVGIFLTWKDLWVTASKGKNGSKTILEGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLGSNIRQTGEILINGRKQALAYGTSAYVTQDDTLLTTLTVKEAVHYSAQLQLPDSMSKAEKKEIADFTIREMGLQDAINTRIGGWGSKGISGGQKRRVGICIEILTRPKLLFLDEPTSGLDSAASYYVMRRIATLAQKDGIQRTVIASIHQPSSEVFQLFHNLCLLSSGRTVYFGPASAATEDIEVGLAGTGTIPTEEAIRILVTSYKSSERNQEVQNEVAVLSEKETSSIDKKRGHAGFLNQCLVLIKRSSVNMFRDLGYYWLRLAIYVALALSLGTVFYNLDTSNGSIKDRGSLLAFVSAFLTFMTIGGFPSFVEDMKVFQRERQNGHYGVTAFVIGNTFSSVPYLLLVTLIPGVITYFLAGLQKGYEHILYFLCVIFSSLMLVESLMMIVATVVPNFLMGIITGAGIQGIMLLISGFFRLPHDLPRPFWRYPSHYVAFHTYAFQGLLKNEFEGLRFATNQGSHNYISGEEILRNTWQVDMSISKWVDLAILVGMIVLYRVLFFIIIKTIEKVKPVVVSLSCMSGSPKGTIQIVENPNATPLQGEVL 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4965g00006 663 Pfam ABC-2 type transporter 357 568 IPR013525 GO:0016020|GO:0140359
Gabi4965g00006 663 ProSitePatterns ABC transporters family signature. 204 218 IPR017871 GO:0005524|GO:0016887
Gabi4965g00006 663 FunFam ABC transporter family protein-like 61 301 - -
Gabi4965g00006 663 Gene3D - 61 300 IPR027417 -
Gabi4965g00006 663 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 309 635 - -
Gabi4965g00006 663 Pfam ABC transporter 83 232 IPR003439 GO:0005524
Gabi4965g00006 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 297 IPR027417 -
Gabi4965g00006 663 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 61 307 IPR003439 GO:0005524
Gabi4965g00006 663 SMART AAA_5 90 279 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4965g00006 Gabi-Chr4965 110456 118353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4965g00006 80 292 Calmodulin-binding Proteins AT2G36910 27.982 1.64e-09 59.3