Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4965g00003 ATGGGTCCTTCAGGCTGTGGAAAATCCACTTTTCTTGATGCTTTAGCAGGAAGATTGAGCTCAAACATAAGGCATACAGGGAATATTCTAATCAATGGCCACAAACAAGCACTGGCTTATGGAACATCAGGCTATGTAGCACAAGATGATGCTATGCTGTCAAATTTAACGGCTGGGGAAACTTTGTACTACTCAGCTCAGCTCCAATTTCCAGATTCCATGTCCATGGCAGAGAAGAAGGAACGTGCAGAAATGACAATCAGAGAAATGGGTCTGCAAGATGCCATTAACACAAGGGTTGGAGGGTGGGGTTCTAAAGGACTCAGTGGAGGACAGAAGAGGAGACTTAGCATTTGCATTGAGATCCTAACACGCCCGAGACTTCTCTTCCTTGATGAACCAAATAGTGGGCTTGATAGTGCAGCTTCATATTATGTTATGAAAAGAATTGCAAGTCTAAATCTAAGGGATGGCATTCTAAGGACTATTGTTACATCCATCCATCAGCCTAGTAGTGAAGTTTTTGAACTTTTCCATGACCTCTGTCTTTTGTCTTGTGGTGAAACTGTATATTTTGGCCCGGCTTCTGATGCAAATCAGTTTTTTGCTTCAAATGGTTTTCCTTGCCCAACTCTCTACAATCCTTCTGATCATTACTTGAGGATCATAAACAAAGATTTTGAACAGGATGCTGAAGAAGGCCTTGGTAAGGGAGCAACCACAGAAGAAGCAATTGGTATCCTTGTAAAGTCATATAGATCGTCTAAAATTAGAAACAAAGTTAAAATGGAAGCGGCAAAAATAAGCGAAAGTGATTCTGGTGCAATTGGGAAGAAGAGGATCCACGCTGCATTCCTCACTCAATGCCTTGTTCTTATAAGAAGATCTTCCCTTCAATTGTTTCGCGACATTAGCAATTACTGGTTACGTTTAGTTGGCTTTACTGTAATAGCGATAAGTATTGGCTCTATCTTCTATGACATTGGCTCAAGTGATGAACCTATGCAGGGGAGAGGTTCGCTGCTCACTTTTTTTATTTCACTTCTCAGTTTCTTGATCCTTGTTGGTGGATTATGTCCACTTTTGGAGGAAATGAAGGTATTTGAACGAGAGAGATTGAATGGGCACTATGGTATTACAGCTTTTCTTATAGGCAACATACTCTCTGCTGTTCCTTACATGCTAATGATCTCTCTGATTCCTGGAGGAATAGCTTACTACCTTTGTGGGCTGCACAAAGGACTAGAAAACGTTTTGTACTTCATTTGTTTGCTATTTGCCATTGTGATGTGGGTTGAGAGCCTTATGTTAGTTGTTGGGAGTATCTCCCCCAATTATATAATAGGCGTGTTCATTGGTGGTGGAATTGTAGGACTCATGATTTTATTAGGTGGATTCTATCGACTGCCAAATGATCTTCCAAAACCATTATGGAAATACCCTTTATATTATATGTCTTTCATCAAGTATGCCTTGCAAGGGTCATTCAAGAATGAATTCGAAGGTTTAACATTTTCTAAAGAACAACATGGAGGAGGCACCAAAATCACCACTGGTAAAGAAATATTGACCGAGACATTGCACGTGGAAATGGGTCACTCTAAGTGGGTTGATCTTGCCATCATGTTTGCAATGATTGTTCTGTATCGAGTTCTATTCTTGGCTATCACTAAGTGTAAGGAGAAGTTGAAACCCGTTGTTGCTGCCTTTACTCGTCCCCGAGCAAATTTTTTCAAGACCAACATCATTAGAGCCCACAAAACTAGTCCAACCTGGATTGAATTATTTGATGCAGAAATTTGTGATTCTTCAAAAGGAATTCTTGATTGA 1830 0.4027 MGPSGCGKSTFLDALAGRLSSNIRHTGNILINGHKQALAYGTSGYVAQDDAMLSNLTAGETLYYSAQLQFPDSMSMAEKKERAEMTIREMGLQDAINTRVGGWGSKGLSGGQKRRLSICIEILTRPRLLFLDEPNSGLDSAASYYVMKRIASLNLRDGILRTIVTSIHQPSSEVFELFHDLCLLSCGETVYFGPASDANQFFASNGFPCPTLYNPSDHYLRIINKDFEQDAEEGLGKGATTEEAIGILVKSYRSSKIRNKVKMEAAKISESDSGAIGKKRIHAAFLTQCLVLIRRSSLQLFRDISNYWLRLVGFTVIAISIGSIFYDIGSSDEPMQGRGSLLTFFISLLSFLILVGGLCPLLEEMKVFERERLNGHYGITAFLIGNILSAVPYMLMISLIPGGIAYYLCGLHKGLENVLYFICLLFAIVMWVESLMLVVGSISPNYIIGVFIGGGIVGLMILLGGFYRLPNDLPKPLWKYPLYYMSFIKYALQGSFKNEFEGLTFSKEQHGGGTKITTGKEILTETLHVEMGHSKWVDLAIMFAMIVLYRVLFLAITKCKEKLKPVVAAFTRPRANFFKTNIIRAHKTSPTWIELFDAEICDSSKGILD 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4965g00003 609 ProSitePatterns ABC transporters family signature. 108 122 IPR017871 GO:0005524|GO:0016887
Gabi4965g00003 609 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 571 - -
Gabi4965g00003 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 202 IPR027417 -
Gabi4965g00003 609 Pfam ABC transporter 1 135 IPR003439 GO:0005524
Gabi4965g00003 609 Pfam ABC-2 type transporter 168 230 IPR043926 GO:0140359
Gabi4965g00003 609 Gene3D - 1 206 IPR027417 -
Gabi4965g00003 609 Pfam ABC-2 type transporter 287 500 IPR013525 GO:0016020|GO:0140359
Gabi4965g00003 609 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 211 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4965g00003 Gabi-Chr4965 50220 58095 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4965g00003 1 148 Calmodulin-binding Proteins AT2G36910 30.769 4.54e-07 51.2