Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4965g00002 ATGACTCAATTGTCTACTCAGTCATCCTATTCTTTCGAAAATGATTTTCTTAAGGAGACTGAAAAAAAGTCTATCAGTGATGTGAAACTTTGTGTTGAGGTAACTACCTGCATCACATACGGGACTATAAAGGCAATTGAGAGCAAATACAACTGGTGGTACAAGTCATGCAAAAAGTGTCCATTTTCCGTTTATGAGGATTTTGAGAAGTGGTATTGTAAGAACTGCCAAAAACATTGGGAAAATTATTATCCGAGATTTAGTGTTCAGGTCAGAGTTGTGGATAACACAGATTCCGCATCCTTTATTCTGTTTGATCGCGACTGTGTGTCTTTGTTGGGAATGAGTGCTGCTGAATTGCGCGAGCTGCATTTCAAGAGGGGTGCCGATTTGGATCAATTTCCAAATGAGTTAAATGTTCTGAATGAAAAGTCAATGTTGTTCAAGATAAATGTTAAGCAAAAGGATTTGAACACAAATAGTGAGCCCAAATATCAAGTTTCCAAAATTTGTATCAGCGAAGACATAATCTCAGCGTTCATTAAGTCTCTTATAGATCCAAATGATGAAGCAAATTTCGATAATGCACGCGAAAATGAAGTTGTTTCGTCGGAACTGGAAAAGGCTGCGGTGAGCTATGAATTCGATTTAGATTCATATGCAATTCTTACAGAAGAGTCTATAAAAAGCATAACTCTTAAAGAAATTGATAAGGTACTGCAGAGCAATGGGAAATGCCTCTCTGATTATCCGTCAATGCCACGCATCAATAGTGAAACTTTGCTTGATATGCAAAATCGATTAGTGTTGGATGAATTAATGTATGACAGATTTGCTTTGGAAGAGGAGCATAAAAGACTAATTAATTCCCTCACTGATGAGCAGAAAGCTGTTTATGATAAAATTGTTTCAGCAGTTACGGCAGGCAATGGAGGGTTATTTTTCCTATACGGGTTCGGTGGTACAGGAAAAACATTTATTTGGAATACTCTTTCAGCATCTATTAGATCAAAAGCTGGAATCGTACTTAATGTTGCTTCTAGCGGAATTGCTTCCCTTCTGCTTCCTGGAGGACGAACAGCGCATTCTAGATTTCGTATTCCTATTCAAATCAATGAAGATTCAATGTGTAATATAAGGCCGAAATCTACTATAGCTGAGTTGCTGTCAAAAACAAAGTTAATCATTTGGGATGAAGCTCCAATGGTACATAGATTTTGCTTTGAGGCTCTGGATAGGACATTGAGAGATGTTCTTAGAATTTCTGATACAAGCTGTGTTGATATGCCATTTGGTGGAAAAGTTGTTGTTCTAGGAGGTGACTTTCGGCAAATATTACCTGTCATTCCTCATGGCAGCAGACAAGATATAGTTCATGCAACCATCAATTCTTCTCATCTATGGTCCCATTGTCATTTATTAACTTTGACCAAGAACATGCGTCTTAATTCTGGAAGTAGCGCTCACAATTTAGAGGAAATAAAAGAATTTTCTGAGTGGCTACTTAAAGTTGGGGATGGTAATCTTGGAGATGATGTTGATGGAGAATCTATTATAACAATTCCAGATGAATTGTTGATTAGAGAATCGGAAGATCCGCTGTCGGATATGGTTAATTTTGTTTATCCGAATCTCTTGGATAATATTTTGGATCAGACCTTCTTTAAAGAACGTGCTATTCTAACTCCTAAATTGTCCGATGTTGCTATGCTAAACGAGCACCTAATGTCTATGATTCCTGGTGAAGAAAGGACTTTTTTGAGTTCGGATAAAATTCTTAAGCAAGGTGGGACTTCCTCTGTTGAGGATGATGAAATCACCCCTGAGATCTTAAATACATTATCATGCTGA 1851 0.3744 MTQLSTQSSYSFENDFLKETEKKSISDVKLCVEVTTCITYGTIKAIESKYNWWYKSCKKCPFSVYEDFEKWYCKNCQKHWENYYPRFSVQVRVVDNTDSASFILFDRDCVSLLGMSAAELRELHFKRGADLDQFPNELNVLNEKSMLFKINVKQKDLNTNSEPKYQVSKICISEDIISAFIKSLIDPNDEANFDNARENEVVSSELEKAAVSYEFDLDSYAILTEESIKSITLKEIDKVLQSNGKCLSDYPSMPRINSETLLDMQNRLVLDELMYDRFALEEEHKRLINSLTDEQKAVYDKIVSAVTAGNGGLFFLYGFGGTGKTFIWNTLSASIRSKAGIVLNVASSGIASLLLPGGRTAHSRFRIPIQINEDSMCNIRPKSTIAELLSKTKLIIWDEAPMVHRFCFEALDRTLRDVLRISDTSCVDMPFGGKVVVLGGDFRQILPVIPHGSRQDIVHATINSSHLWSHCHLLTLTKNMRLNSGSSAHNLEEIKEFSEWLLKVGDGNLGDDVDGESIITIPDELLIRESEDPLSDMVNFVYPNLLDNILDQTFFKERAILTPKLSDVAMLNEHLMSMIPGEERTFLSSDKILKQGGTSSVEDDEITPEILNTLSC 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4965g00002 616 Pfam PIF1-like helicase 291 615 IPR010285 GO:0000723|GO:0003678|GO:0006281
Gabi4965g00002 616 PANTHER UNCHARACTERIZED 224 615 - -
Gabi4965g00002 616 Gene3D - 287 475 IPR027417 -
Gabi4965g00002 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 481 IPR027417 -
Gabi4965g00002 616 Gene3D - 4 177 IPR012340 -
Gabi4965g00002 616 SUPERFAMILY Nucleic acid-binding proteins 35 171 IPR012340 -
Gabi4965g00002 616 CDD RPA1_DBD_C 37 186 IPR047192 -
Gabi4965g00002 616 Pfam Replication factor-A C terminal domain 39 170 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4965g00002 Gabi-Chr4965 28973 31580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4965g00002 39 170 Core DNA Replication Machinery Family AT5G08020 27.068 5.13e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4965g00002 - - mtr:112416444 441.81