LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4964g00006	ATGTCCCTCAAGCTTGTGTTACTGGTGATTTTGCTGGTGACACAGGTAGCCAGTGAAGACACCAGTTTCATCTATAACGGGTTCCAATCATCTCATTTGTATGTTGATGGTATTGCTGAGTTAACCTCCAACGGCTTACTCAGACTTACCAATGACACCAAGCAACAAAAGGGTCATGCCTTTTATCCAAGTCCTATAGTTTTCAAGAACACCTTCAATGGAAGTGTGTCTTCTTTCTCCACTACTTTTGTGTTTGCAATAAGAACTGAGTATCCCACTCTGAGTGGTCATGGCATTGTTTTTGTGGTTTCTCCAACAAAAGGGCTTCCAAATTCTCTTCCAAGCGCGTACCTTGGCCTCTTTGACAAGTCTAACAATGGCAACGACAGCAACCATGTTTTTGGGGTGGAACTTGATACCATTCTGAACAGTGAGTTTGCTGATATCAACGACAACCATGTTGGAATTGCGATGCAAGTATGGGTGGAATATGATGGGGTAAAGAAGCAGATTGATGTTACTTTAGCTCCAATCAACATTGGTAAACCAGAACGCCCTTTGTTATCATTGACAAAAGATCTTTCTCCAATTCTGAACAATATCATGTATGTTGGATTTTCATCCTCTACTGGGTCAGTCCTAACTTCCCATTATGTTCTGGGTTGGAGCTTTAAGGTCAATGGCCAGGCTCAACAACTTGCAATCTCTGAACTCCCCAAGTTACCTAGACTTGGTGATAAAAAAGAGTTTAAGTTTTTAACTGCTGGATTGCCTTTGATATCAGTTGTTTTGGTTCTCATGATAACTCTAGCAGTGGTTTTTGTCATCAAAAGGAAGAAGAAGTTTGCTGAGGTGCTTGAGGATTGGGAACAGGAATATGGTCCTCATAGATTCAAGTTCAAAGATCTTTACTTTGCCACAAAGGGGTTTAAGGAGAAGGAGCTATTGGGAACTGGTGGATTTGGTAGAGTCTACAAAGGGGTCATGCCAATTTCCAAAATTGAAGTTGCAGTGAAGAAGGTGTCCCATGAATCCAGACAAGGGATGAGGGAATTTGTGTCAGAAATTGTTAGCATTGGTCGTCTTCGCCATAGGAATCTGGTTTCACTTCTGGGATATTGCAGGCGCAAAGGAGAGTTGCTTTTGGTCTATGAATACATGCCAAATGGAAGCCTAGACAAGTATCTCTATAACCAACCAACAGTGACCTTAACTTGGAGCCAAAGATTTAGAATCATCAAAGGGGTTGCTTCAGGTCTGTTTTATCTACATGAAGAATGGGAGCAAGTTGTGGTACACAGAGACATAAAGGCAAGCAATGTACTACTAGATGCAGAATTGAATGGTAGATTGGGGGACTTTGGTCTTGCAAGGTTATATGACCATGGAACTGATCCTCAAACCACCCATGTTGTTGGAACTCTTGGGTATCTAGCTCCAGAGCATACTAGAACTGGCAAGGCCACTACAAGCTCTGATGTGTTTGCATTTGGTGCATTTCTACTAGAGGTTGTCTGTGGAAAGAGGCCAATAGAGCACATAGGGGAACATGAGACTAGAATTCTGGTTGATTGGGTGTATGCTTGTGGGAAAAGAGGTGAGATACTTGAGGCAAAGGATGTAAATTTGGGCATAGATTATAGGTCTGATGAGGTGGAGTTGGTGTTGAAACTTGGTTTGTTGTGTTCACATTCAGAGCCTTTAGCTAGGCCTAGCATGCGCCAAGTTGTACAGCACTTGGAGATGGATGAACCTTTGCCAGATTTATCTTTGCTTAGCTTATCTTCCACTGGCTTAACTTTTGGATACCATGAAGATTCTGAGGGCTTTGCACTGTCCTATCCATCTTCTATGGATAAGCCCTTCACCCATATTACCAATACTAGTACTACTACTACTACTTCAATTGCTGAATCATTTCTATCTAGTGGTCGTTGA	1938	0.42	MSLKLVLLVILLVTQVASEDTSFIYNGFQSSHLYVDGIAELTSNGLLRLTNDTKQQKGHAFYPSPIVFKNTFNGSVSSFSTTFVFAIRTEYPTLSGHGIVFVVSPTKGLPNSLPSAYLGLFDKSNNGNDSNHVFGVELDTILNSEFADINDNHVGIAMQVWVEYDGVKKQIDVTLAPINIGKPERPLLSLTKDLSPILNNIMYVGFSSSTGSVLTSHYVLGWSFKVNGQAQQLAISELPKLPRLGDKKEFKFLTAGLPLISVVLVLMITLAVVFVIKRKKKFAEVLEDWEQEYGPHRFKFKDLYFATKGFKEKELLGTGGFGRVYKGVMPISKIEVAVKKVSHESRQGMREFVSEIVSIGRLRHRNLVSLLGYCRRKGELLLVYEYMPNGSLDKYLYNQPTVTLTWSQRFRIIKGVASGLFYLHEEWEQVVVHRDIKASNVLLDAELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATTSSDVFAFGAFLLEVVCGKRPIEHIGEHETRILVDWVYACGKRGEILEAKDVNLGIDYRSDEVELVLKLGLLCSHSEPLARPSMRQVVQHLEMDEPLPDLSLLSLSSTGLTFGYHEDSEGFALSYPSSMDKPFTHITNTSTTTTTSIAESFLSSGR	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4964g00006	645	Gene3D	-	158	240	-	-
	Gabi4964g00006	645	Pfam	Legume lectin domain	158	239	IPR001220	GO:0030246
	Gabi4964g00006	645	Pfam	Legume lectin domain	21	157	IPR001220	GO:0030246
	Gabi4964g00006	645	FunFam	Lectin-domain containing receptor kinase A4.3	295	386	-	-
	Gabi4964g00006	645	CDD	STKc_IRAK	316	581	-	-
	Gabi4964g00006	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	431	443	IPR008271	GO:0004672\|GO:0006468
	Gabi4964g00006	645	SUPERFAMILY	Protein kinase-like (PK-like)	285	583	IPR011009	-
	Gabi4964g00006	645	PANTHER	-	17	585	-	-
	Gabi4964g00006	645	ProSitePatterns	Protein kinases ATP-binding region signature.	316	340	IPR017441	GO:0005524
	Gabi4964g00006	645	Gene3D	Phosphorylase Kinase; domain 1	295	386	-	-
	Gabi4964g00006	645	ProSiteProfiles	Protein kinase domain profile.	310	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4964g00006	645	CDD	lectin_legume_LecRK_Arcelin_ConA	21	228	IPR001220	GO:0030246
	Gabi4964g00006	645	Pfam	Protein kinase domain	310	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4964g00006	645	SMART	serkin_6	310	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4964g00006	645	Gene3D	Transferase(Phosphotransferase) domain 1	387	586	-	-
	Gabi4964g00006	645	FunFam	L-type lectin-domain containing receptor kinase S.4	387	593	-	-
	Gabi4964g00006	645	SUPERFAMILY	Concanavalin A-like lectins/glucanases	21	246	IPR013320	-
	Gabi4964g00006	645	Gene3D	-	18	157	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4964g00006	Gabi-Chr4964	93309	95526	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4964g00006	15	645	Receptor kinase-like Gene Family	AT2G37710	61.353	0.0	803

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gabi4964g00006		Pkinase	7.6e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4964g00006	-		-	gmx:100783815	978.393