Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4964g00003 ATGGCTACCCTTCTCCAATTCTTTTATCTGTTAATCTTCCTTTTAATCCCAGTTTCTTCCCAGCTTGACCAGCTCTTGTATGCTGGATTCAAGGATGTGGGTGCAAACAATCTAACCTTGAATGGAGTAGCAGAAATAGAGAAAAATGGAATACTGAAATTGACAAATGAGACAAGCAAATCAAAAGGCCATGCTTTTTACCCATTTCCTTTTCAGTTAAAGAACTCTAGCACTGGTAAAGTTTTCTCCTTTTCTTCCTCATTTGCTCTGGCTATTGTCCCTGAATATCCCAAGCTAGGTGGCCATGGCTTGGCTTTCACAATATCAACTTCTAAGGATCTTAAAGATTCTCTCCCTAGTCAGTATCTTGGTCTCCTTAATTCCAAAGATGCTGGCAATTTCACCAACCATCTTTTTGCTGTTGAGTTTGACACTGTTCAAGACTTTGAGTTTGAGGACATTAATGATAACCATGTTGGAATTGACATCAACAGCTTGCAATCCAATGCTTCTGTTACCGCAGGTTATTACACTGGTGACTCAACAAAACAAGATCTCAACATCAAAAGTGGGAAACCGATTCTGGCTTGGGTTGATTATGATTGTGAACAGAATCTTATCAGTGTTACACTTTCTCCAGATTCATCCAAACCCAAAAAGCCAATCTTGTCCTTTCATGTGGATCTCTCACCAATTCTTCATGATACTATGTATGTTGGGTTCTCTGCATCAACGGGTTTGCTTGCTAGCTCCCATTACATCTTGGGTTGGAGCTTTAGAATCAATGGACCAGCACCACCCCTTGATCTATCTTCTCTCCCACAACTTCCACAACCAAAGAAGAAGCAAACGTCTCTGATAACAGGGGTTTCTGTCACAGTGGCTGTTATTGCTTTGTGTTCTATATCCATTGGCATTTACCTCTTCAGAAAAATCAAGAACGCTGATGTGATAGAAGCATGGGAGCTTGAAGTTGGGCCACACAGGTACTCTTATCAAGAGCTCAAGAAAGCTACAAGAGGTTTCAAGGACAAAGAGCTACTTGGGCAAGGTGGTTTTGGCAGAGTTTACAAAGGAACATTGCCAAATTCAAAGACCCAAGTAGCTGTTAAGCGAGTTTCACATGAATCTAAACAAGGTCTGAGGGAATTTGTGTCTGAAATAGCCAGCATTGGCCGGCTTCGCCACCGGAATTTGGTTCAATTACTCGGCTGGTGTCGCCGCCGCGGTGACCTCCTACTTGTGTATGATTTCATGGCTAATGGGAGCTTGGACAAGTACTTGTTTGAAGAGGCAAAAAATGTACTAAATTGGGAACAAAGGTTCAAGATAATAAAGGATGTTACTTCAGCACTTCTGTATCTACATGAAGGCTATGAGCAAGTGGTGATACATAGAGATGTGAAGGCTAGCAATGTGTTGCTAGATTTTGAACTCAATGGAAGATTAGGTGATTTTGGATTAGCAAGGTTGTATGAACATGGTGCTAACCCAAGCACAACAAGAGTGGTGGGTACCTTAGGCTATTTGGCACCTGAGTTGCCTAGAACAGGAAGGGCAACTACAAGTTCTGATGTTTTTGCATTTGGTGCACTTTTGCTAGAAGTGGTGTGTGGGCGTAGGCCTATTGAGCCTAAGGCATTACCAGAAGAGTTGATTTTGGTGGATTGGGTGTGGGACAGATACAAAGAAGGAAGAATACTTGATGTGGTTGACCCAAAACTAAATGGTAATTTTGATGAAAGGGAGGTGATGATGGTGTTGAAATTGGGGTTGATGTGTTCCAATGATGTGCCCAATGCTAGGCCTAGCATGAGGCAAGTGGTGAGGAGTTTAGATGGAGAAGTTGAGTTGCAAGATGACTTGAAAAAACCAGGAGATATAAGTCAAAGGGGTGATGGGTTTGATGAGTTTGTGGACTCACTTGCATCTTCTTCTTTTGATAAGATGAGCTCAAGCTCCTATCTTGGATATAGAGACATGGATACTAGTTTTCTTTCTTTTGCTAATTCACCTCAGTCCCTTCTCCATGGTAGAGGACAAACAAGGTGA 2052 0.4191 MATLLQFFYLLIFLLIPVSSQLDQLLYAGFKDVGANNLTLNGVAEIEKNGILKLTNETSKSKGHAFYPFPFQLKNSSTGKVFSFSSSFALAIVPEYPKLGGHGLAFTISTSKDLKDSLPSQYLGLLNSKDAGNFTNHLFAVEFDTVQDFEFEDINDNHVGIDINSLQSNASVTAGYYTGDSTKQDLNIKSGKPILAWVDYDCEQNLISVTLSPDSSKPKKPILSFHVDLSPILHDTMYVGFSASTGLLASSHYILGWSFRINGPAPPLDLSSLPQLPQPKKKQTSLITGVSVTVAVIALCSISIGIYLFRKIKNADVIEAWELEVGPHRYSYQELKKATRGFKDKELLGQGGFGRVYKGTLPNSKTQVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFEEAKNVLNWEQRFKIIKDVTSALLYLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGRATTSSDVFAFGALLLEVVCGRRPIEPKALPEELILVDWVWDRYKEGRILDVVDPKLNGNFDEREVMMVLKLGLMCSNDVPNARPSMRQVVRSLDGEVELQDDLKKPGDISQRGDGFDEFVDSLASSSFDKMSSSSYLGYRDMDTSFLSFANSPQSLLHGRGQTR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4964g00003 683 FunFam L-type lectin-domain containing receptor kinase S.4 21 267 - -
Gabi4964g00003 683 CDD lectin_legume_LecRK_Arcelin_ConA 24 263 IPR001220 GO:0030246
Gabi4964g00003 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Gabi4964g00003 683 Gene3D Transferase(Phosphotransferase) domain 1 419 627 - -
Gabi4964g00003 683 Pfam Legume lectin domain 25 273 IPR001220 GO:0030246
Gabi4964g00003 683 CDD STKc_IRAK 348 614 - -
Gabi4964g00003 683 FunFam L-type lectin-domain containing receptor kinase S.4 419 625 - -
Gabi4964g00003 683 Gene3D - 24 262 - -
Gabi4964g00003 683 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Gabi4964g00003 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 281 IPR013320 -
Gabi4964g00003 683 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
Gabi4964g00003 683 PANTHER - 30 616 - -
Gabi4964g00003 683 FunFam Lectin-domain containing receptor kinase A4.3 327 418 - -
Gabi4964g00003 683 SMART serkin_6 342 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4964g00003 683 Pfam Protein kinase domain 342 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4964g00003 683 ProSiteProfiles Protein kinase domain profile. 342 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4964g00003 683 SUPERFAMILY Protein kinase-like (PK-like) 324 610 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4964g00003 Gabi-Chr4964 53848 56184 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4964g00003 18 654 Receptor kinase-like Gene Family AT3G55550 60.031 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi4964g00003 Pkinase 4.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4964g00003 - - gmx:100784346 1102.81