Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4962g00001 ATGGACATTCTTACTTCCATGATTATAATTGCCTATGCATTTGTTCCCTTATTCAAAGTTTCCATAGCAGCTGACTCTATTGGTTTGTCACAGTCTATCAGCAATGGCAATACCTTAGTGTCACAAGGTGGAACATTTGAACTTGGTTTCTTCACCAAGTCAAATAAAAGCTACTTGGGTATTTGGTACAAGAATATCCGAATTCAGAAAGTTGTTTGGGTTGCAAACAGGGTCAACCCCATCAATGGTTCAAATGCCACCTTAACACTCAACAGCACAGGCAATCTTGTCCTTAGTCAAAATGGGTCTGTGGTTTGGTACACAACACCTCAAAAGCAAGCACACAATCCAGTGGCGGTGCTCTTGGACACTGGGAATCTTGTGCTAAGAAATGAAGGAGAATCAAACCCTGAGGACTATTTGTGGCAAAGCTTTGATTATCCTTCAGATACATTATTGCCAGGGATGAAGTTGGGAAGGAACCTAAGACTTGGTCTTGATTGGACACTAACAACATGGAAGAGTCCAGATGATCCATCCCCTGGAGATGTTTCTGAAGGTTTAGTTCTTCATAATTATCCTGAGTTTTATACAATGAAGGGAACAGAAAAGTTCTTCAGGTATGGACCATGGAATGGGATAGAAATTAGTGGAATACCAGGATCACCATCCACCACCATATTGGATTTCACTTTTGTCACCAATAATGATGAGATCTACTACACTTACAGCTTCAACAACAACTCTGTCATTTCAATACTGGTATTAAACCAAACCAGTACTGTTCGCTATGTATGGGATGATCAAGACCAAAATTGGAGGATTTATACATTAGACCCCAAAGACTTTTGTGACACTTATGGTCTATGTGGAGCCTACGGGAATTGCATGATTACTCAACTACCAGTGTGCCAATGCTTCAATGGGTTCAGTCCAAAGTCACCACAAGCATGGATCTCATCAGATTGGAGTCAAGGATGTGTCCGCAATAAACCATTGAGCTGCAATGACACATACACGGATGATGGGTTTGTCAAATTTGAAGGCCTGAAAGTTCCAGACACTACATATACTTGGTTAAATGAAAGTATGGGTCTAGAGGAATGCAGAGTGAAGTGCTTGAATAATTGCTCTTGCATGGCTTATACAAATTCAAATATAAGTGGAGCTGGTAGTGGTTGTGTCATGTGGTTTGGTGATCTAATTGACATGAGACAGTTTCAAGAGGGAGGGGAAGATCTTTATGTCCGGATGTCAGCTTCAGATATAGTCAACAATGAAGAGCTTGAAGATAGGAGCAAAAAGAACACGAGAAGCATCGTTGCTGCCACCATTGTTTCAATTTGTGGAGTACTTTTACTATGTATTTACTTTATCTGGAGAATCCGGAAGAAGATTGCTGTGAGATCTCAAAGGCAATTGAATGATCTAGATCTGCCATTGTTTGATCTACCAACAGTTGCTGCTGCCACTAATGACTTCTCAATGAACAAAAAGATCGGAGAAGGTGGTTTTGGACCTGTATATAGGGGAAAATTATTGGATGGTCGAGAAATTGCTGTCAAGAGACTTTCAAGCTTATCAAAACAAGGAATGACCGAGTTCATAAATGAAGTGAAACTAATTGTAAAACTTCAGCATCGTAATCTTGTAAAGCTTCTTGGCTGTTGCATTCACGGACAAGAACTGATGCTGATTTATGAATACATGGCTAACAGTAGCCTAGACTCCTTCATTTTCGCTGATACCAAGGGTAAAGTGCTAGAGTGGCCTCAACGGTTCAACATAATTTGTGGAATTGCTAGGGGCCTCGTGTATCTTCACCAAGACTCACGATTGAGGATTATCCATAGAGATCTCAAAGCAAGTAATGTGTTACTTGATGATAGTTTGAATCCCAAAATATCAGATTTTGGAATGGCAAAAACTTTTGGAGGAGACCAGACCGAAGGAAACACAAATAGAGTAGTTGGAACTTACGGGTACATGGCACCAGAGTATGCTGTTGATGGGTTGTTTTCAGTGAAATCTGATGTCTTTAGTTTTGGTATTTTATTGTTGGAGGTTATTAGTGGCAGGAGAAATAGAGCATATTACCACATGGATGACAATCTTAACCTTGTTGGCTATGCATGGACATTGTGGAAAGAGGACAGACCTTTAGATTTGATTGATATAAAGATAGGGAACTCTTGTGATGTATCAGAAGTATTGCGTTGCATACATGTTAGTCTCTTGTGCGTGCAACAGTACCCTGAAGATAGGCCTACAATGGCCTCTGTGATTCTAATGTTGGGGAGTGAGATGGAATTGGTTGAGCCTAAAATGCCTGGTTCCATTTCGAGGAATGTTTCAATGGAAACATATGTACGCTCATGCTCGACCAACGAAATAACCATTACCTTATTAGAGGCTCGATGA 2421 0.4036 MDILTSMIIIAYAFVPLFKVSIAADSIGLSQSISNGNTLVSQGGTFELGFFTKSNKSYLGIWYKNIRIQKVVWVANRVNPINGSNATLTLNSTGNLVLSQNGSVVWYTTPQKQAHNPVAVLLDTGNLVLRNEGESNPEDYLWQSFDYPSDTLLPGMKLGRNLRLGLDWTLTTWKSPDDPSPGDVSEGLVLHNYPEFYTMKGTEKFFRYGPWNGIEISGIPGSPSTTILDFTFVTNNDEIYYTYSFNNNSVISILVLNQTSTVRYVWDDQDQNWRIYTLDPKDFCDTYGLCGAYGNCMITQLPVCQCFNGFSPKSPQAWISSDWSQGCVRNKPLSCNDTYTDDGFVKFEGLKVPDTTYTWLNESMGLEECRVKCLNNCSCMAYTNSNISGAGSGCVMWFGDLIDMRQFQEGGEDLYVRMSASDIVNNEELEDRSKKNTRSIVAATIVSICGVLLLCIYFIWRIRKKIAVRSQRQLNDLDLPLFDLPTVAAATNDFSMNKKIGEGGFGPVYRGKLLDGREIAVKRLSSLSKQGMTEFINEVKLIVKLQHRNLVKLLGCCIHGQELMLIYEYMANSSLDSFIFADTKGKVLEWPQRFNIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDDSLNPKISDFGMAKTFGGDQTEGNTNRVVGTYGYMAPEYAVDGLFSVKSDVFSFGILLLEVISGRRNRAYYHMDDNLNLVGYAWTLWKEDRPLDLIDIKIGNSCDVSEVLRCIHVSLLCVQQYPEDRPTMASVILMLGSEMELVEPKMPGSISRNVSMETYVRSCSTNEITITLLEAR 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4962g00001 806 CDD B_lectin 30 148 IPR001480 -
Gabi4962g00001 806 Gene3D - 19 145 IPR036426 -
Gabi4962g00001 806 Pfam PAN-like domain 339 404 IPR003609 -
Gabi4962g00001 806 SMART ntp_6 339 418 IPR003609 -
Gabi4962g00001 806 Pfam Protein tyrosine and serine/threonine kinase 495 761 IPR001245 GO:0004672|GO:0006468
Gabi4962g00001 806 ProSiteProfiles EGF-like domain profile. 280 316 IPR000742 -
Gabi4962g00001 806 PIRSF SRK 1 806 IPR024171 GO:0004674
Gabi4962g00001 806 ProSiteProfiles Bulb-type lectin domain profile. 24 142 IPR001480 -
Gabi4962g00001 806 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 756 - -
Gabi4962g00001 806 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 570 773 - -
Gabi4962g00001 806 SUPERFAMILY Protein kinase-like (PK-like) 479 765 IPR011009 -
Gabi4962g00001 806 Pfam S-locus glycoprotein domain 206 314 IPR000858 GO:0048544
Gabi4962g00001 806 CDD PAN_AP_plant 332 417 - -
Gabi4962g00001 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Gabi4962g00001 806 SMART serkin_6 494 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4962g00001 806 SMART blect_4 30 148 IPR001480 -
Gabi4962g00001 806 Pfam D-mannose binding lectin 71 174 IPR001480 -
Gabi4962g00001 806 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 179 IPR036426 -
Gabi4962g00001 806 Gene3D Phosphorylase Kinase; domain 1 458 569 - -
Gabi4962g00001 806 ProSiteProfiles Protein kinase domain profile. 494 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4962g00001 806 Gene3D Transferase(Phosphotransferase) domain 1 570 776 - -
Gabi4962g00001 806 ProSiteProfiles PAN/Apple domain profile. 335 419 IPR003609 -
Gabi4962g00001 806 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 460 569 - -
Gabi4962g00001 806 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 145 - -
Gabi4962g00001 806 CDD STKc_IRAK 500 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4962g00001 Gabi-Chr4962 74834 80400 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4962g00001 440 799 Receptor kinase-like Gene Family AT4G23190 49.593 2.05e-123 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4962g00001 PK_Tyr_Ser-Thr 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4962g00001 - - gmx:100802962 1124.77