Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4961g00012 ATGATAGAGGAAGATCAAGGACAGTGTTCTTCTCAAGCGATCAATAACTTTCAAACCTATCAAGAGCAGCTTCTCCTTCAACAACAGATCATGCAGCAACAAAACAGTGATATCTTTGGTGGAGGAGGAAGAGGATTAATGAACATGTTCCCTTCTGAAGTTTCTCCAATCATGCAACAACCATGGTCTATGCCTCAGGTTCATCACCCTTTCAACCCTGTCAGAGATCATGACCCTTTTCTTGTCCCTCCTCATCAGCCTTCACCCTATGCAAGTTTTTTCAACAGAAGGGTTCCTTCTCTTCAGTTTGCATATGAGGATCCATCTTCTAACCATCTCAGAATCATATCAGATAACATTGGAACTGTGGTTCAACCTGGTTCAGCACCCTTTGGGCTTCAAGCCGAGCTTGGCAAGATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCAGCATCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCATCTTGCTAAACTCCGCAGCATGTTACCCAGCACAACCAAAACAGATAAAGCATCATTGCTAGCTGAAGTGATTCAGCATGTGAAGGAACTGAAGCGTCAAACTTCATTGATAGCAGAAACGAGTCCAGTTCCTACGGAAGCTGATGAGTTAACAGTGGATGCAGCTGATGAAGATGGCAAGTTTGTGATCAAAGCCTCGCTTTGTTGTGATGATAGGTCAGATCTTTTGCCTGAACTCATCAAAACCTTGAAAGCGTTAAGGTTAAGAACACTCAAAGCTGAGATTACTACACTTGGTGGGCGTGTCAAGAACGTGTTGTTTATAACTGGTGAAGAGGATTCAAGTAGCAGTGAAGAATATAGTCACCACCATCAGCAGCATCAACAGTACTGCATTAGTTCAATACAAGAAGCACTCAAGGCAGTGATGGAGAAGAGCGTTGGGGATGAGTCAGCATCTGCAAGTGTTAAGAGACAAAGGACCAATATAATATCAATATCCTAG 1017 0.4336 MIEEDQGQCSSQAINNFQTYQEQLLLQQQIMQQQNSDIFGGGGRGLMNMFPSEVSPIMQQPWSMPQVHHPFNPVRDHDPFLVPPHQPSPYASFFNRRVPSLQFAYEDPSSNHLRIISDNIGTVVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSMLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADELTVDAADEDGKFVIKASLCCDDRSDLLPELIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEDSSSSEEYSHHHQQHQQYCISSIQEALKAVMEKSVGDESASASVKRQRTNIISIS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4961g00012 338 CDD bHLH_AtAIG1_like 147 225 - -
Gabi4961g00012 338 PANTHER TRANSCRIPTION FACTOR BHLH30 34 333 IPR045847 GO:0003700|GO:0006355
Gabi4961g00012 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Gabi4961g00012 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 208 IPR036638 GO:0046983
Gabi4961g00012 338 SMART finulus 158 207 IPR011598 GO:0046983
Gabi4961g00012 338 Gene3D - 146 210 IPR036638 GO:0046983
Gabi4961g00012 338 Pfam Helix-loop-helix DNA-binding domain 155 201 IPR011598 GO:0046983
Gabi4961g00012 338 FunFam transcription factor bHLH30 147 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4961g00012 Gabi-Chr4961 119631 121792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4961g00012 10 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.500 2.23e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4961g00012 HLH 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4961g00012 - - cave:132184452 451.44