Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4961g00010 ATGCTGGTTCGAAGGAAAGTGATGAGCTGGAGAAGAGTGGCCAAATCCCTCCAAGCTCTGATAGCTCATACCTTGCTCTTCTCCTTCACTCTTTTGCTTGCTCTCAAGGTTGACCGTATCGTCCATTGCGCATGGTGGATTGTATTTTTTCCTCTATGGCTTTTTCATGCTGTGCTAGCACGAGGCAGGTTTTCCTTGCCTGCTCCTTCAATGCCTCATGATCGCCAATGGGCTCCTTGTCATTCAGTCATAGCAACACCATTACTTGTTGCATTCGAGCTACTTCTTTGTATACATCTCGGGAGCGGTTATGTGGTGAATTTAAGGATAGTCTTCTTGCCCCTGATAGCTTTTGAACTAGTGATTTTGATTGATAATATCAGGATGTGTAGGGCTTTGATGCCTGGCGATGATGAACATTTAACCGATGAAGCAGTATGGGAAACTCTTCCTGTAAGATACTATTCATCACACTTCTGGATTTCGATATCCATGGTCTTCTTCATTGCTGCTACAGTGTTCACCCTTTTAAAGTTATGTGGTGATGTTAGTGCTCTGGGCTGGTGGGACTTATTTATTAACTACGGGGTTGGACAGTGCTTTGCATTTCTTGTTTGTACAAAGTGGCACAATCCAACAATTCATGGAAACTGTCACATTACGGCACCATGTTCATCATCATCAAATACCATAATATACATGGACGGGAATAGAGGAGGCTTAGTTGTTTCCTCAGATGAAGATATGCAACAATATGGGTTCTGCAGTCTGCAGGACATTGGTGGGCATATTATGAAAATTCCATTCGTTGGTTTTCAAATACTTCTTTTTATGCATTTAGAGGGAACACCATCTGGTGCAAAAAAAATACCAAACTGGGTCATTTTTTGCCCCCTTTATTTGTTGCAAGGAGCTGGGGTTTTATTTGCAGCATATAGATTAATAGAGAAGATAGTTCTTTTACTCTACAGTGGAGATATTCCTAGAGGATACTCAGCTACGGCATCAAAATCCCGTGACTGCTTTGGGTTCTTGCATCATGGATCAAGGTTGCTAGGTTGGTGGTCAATAGATGAAGGGAGTAGAGAGGAAGAAGCTAGACTTTATTGTGCTGGGAGTTCTGGGTATAATACTTTCTCCCCTGATACGGTGAAGAAAATGCCTAGAGCAGATCTCGTTGAGGAGATTTGGAGACTTCAAGCTGCACTGGGTGAGCAGACAGAAGTTACAAAATGTACACAGGAGGAATATGAAAGGCTTCAAAATGAGAAGATCTTATGTAGAGTTTGCTTCGAACAGCAGATTAATGTGGTCCTACTTCCCTGCAGGCATCACATTCTTTGCAGCACTTGCTGCGAAAAATGTAAAAAGTGCCCTGTCTGCCGTTGCACCATTGAAGATCGGATGCCTGTATATGATGTGTAG 1425 0.426 MLVRRKVMSWRRVAKSLQALIAHTLLFSFTLLLALKVDRIVHCAWWIVFFPLWLFHAVLARGRFSLPAPSMPHDRQWAPCHSVIATPLLVAFELLLCIHLGSGYVVNLRIVFLPLIAFELVILIDNIRMCRALMPGDDEHLTDEAVWETLPVRYYSSHFWISISMVFFIAATVFTLLKLCGDVSALGWWDLFINYGVGQCFAFLVCTKWHNPTIHGNCHITAPCSSSSNTIIYMDGNRGGLVVSSDEDMQQYGFCSLQDIGGHIMKIPFVGFQILLFMHLEGTPSGAKKIPNWVIFCPLYLLQGAGVLFAAYRLIEKIVLLLYSGDIPRGYSATASKSRDCFGFLHHGSRLLGWWSIDEGSREEEARLYCAGSSGYNTFSPDTVKKMPRADLVEEIWRLQAALGEQTEVTKCTQEEYERLQNEKILCRVCFEQQINVVLLPCRHHILCSTCCEKCKKCPVCRCTIEDRMPVYDV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4961g00010 474 ProSiteProfiles Zinc finger RING-type profile. 427 462 IPR001841 -
Gabi4961g00010 474 Pfam Transmembrane Fragile-X-F protein 35 302 IPR019396 -
Gabi4961g00010 474 Pfam Zinc finger, C3HC4 type (RING finger) 425 467 - -
Gabi4961g00010 474 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 474 - -
Gabi4961g00010 474 Coils Coil 403 423 - -
Gabi4961g00010 474 SUPERFAMILY RING/U-box 418 469 - -
Gabi4961g00010 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 473 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4961g00010 Gabi-Chr4961 89135 98486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4961g00010 12 474 C3H Transcription Factor Family AT1G73950 62.633 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4961g00010 - - gmx:113000756 820.461