Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4961g00009 ATGCTGGTTCGAAGGAAAGTGATGAGCTGGAGAAGAGTGGCCAAATCCCTCCAAGCTCTGATAGCTCATACCTTGCTCTTCTCCTTCACTCTTTTGCTTGCTCTCAAGGTTGACCGTATCGTCCATTGCGCATGGTGGATTGTATTTTTTCCTCTATGGCTTTTTCATGCTGTGCTAGCACGAGGCAGGTTTTCCTTGCCTGCTCCTTCAATGCCTCATGATCGCCAATGGGCTCCTTGTCATTCAGTCATAGCAACACCATTACTTGTTGCATTCGAGCTACTTCTTTGTATACATCTCGGGAGCGGTTATGTGGTGAATTTAAGGATAGTCTTCTTGCCCCTGATAGCTTTTGAACTAGTGATTTTGATTGATAATATCAGGATGTGTAGGGCTTTGATGCCTGGCGATGATGAACATTTAACCGATGAAGCAGTATGGGAAACTCTTCCTCACTTCTGGATTTCGATATCCATGGTCTTCTTCATTGCTGCTACAGTGTTCACCCTTTTAAAGTTATGTGGTGATGTTAGTGCTCTGGGCTGGTGGGACTTATTTATTAACTACGGGGTTGGACAGTGCTTTGCATTTCTTGTTTGTACAAAGTGGCACAATCCAACAATTCATGGAAACTGTCACATTACGGCACCATGTTCATCATCATCAAATACCATAATATACATGGACGGGAATAGAGGAGGCTTAGTTGTTTCCTCAGATGAAGATATGCAACAATATGGGTTCTGCAGTCTGCAGGACATTGGTGGGCATATTATGAAAATTCCATTCGTTGGTTTTCAAATACTTCTTTTTATGCATTTAGAGGGAACACCATCTGGTGCAAAAAAAATACCAAACTGGGTCATTTTTTGCCCCCTTTATTTGTTGCAAGGAGCTGGGGTTTTATTTGCAGCATATAGATTAATAGAGAAGATAGTTCTTTTACTCTACAGTGGAGATATTCCTAGAGGATACTCAGCTACGGCATCAAAATCCCGTGACTGCTTTGGGTTCTTGCATCATGGATCAAGGTTGCTAGGTTGGTGGTCAATAGATGAAGGGAGTAGAGAGGAAGAAGCTAGACTTTATTGTGCTGGGAGTTCTGGGTATAATACTTTCTCCCCTGATACGGTGAAGAAAATGCCTAGAGCAGATCTCGTTGAGGAGATTTGGAGACTTCAAGCTGCACTGGGTGAGCAGACAGAAGTTACAAAATGTACACAGGAGGAATATGAAAGGCTTCAAAATGAGAAGATCTTATGTAGAGTTTGCTTCGAACAGCAGATTAATGTGGTCCTACTTCCCTGCAGGCATCACATTCTTTGCAGCACTTGCTGCGAAAAATGTAAAAAGTGCCCTGTCTGCCGTTGCACCATTGAAGATCGGATGCCTGTATATGATGTGTAG 1407 0.4279 MLVRRKVMSWRRVAKSLQALIAHTLLFSFTLLLALKVDRIVHCAWWIVFFPLWLFHAVLARGRFSLPAPSMPHDRQWAPCHSVIATPLLVAFELLLCIHLGSGYVVNLRIVFLPLIAFELVILIDNIRMCRALMPGDDEHLTDEAVWETLPHFWISISMVFFIAATVFTLLKLCGDVSALGWWDLFINYGVGQCFAFLVCTKWHNPTIHGNCHITAPCSSSSNTIIYMDGNRGGLVVSSDEDMQQYGFCSLQDIGGHIMKIPFVGFQILLFMHLEGTPSGAKKIPNWVIFCPLYLLQGAGVLFAAYRLIEKIVLLLYSGDIPRGYSATASKSRDCFGFLHHGSRLLGWWSIDEGSREEEARLYCAGSSGYNTFSPDTVKKMPRADLVEEIWRLQAALGEQTEVTKCTQEEYERLQNEKILCRVCFEQQINVVLLPCRHHILCSTCCEKCKKCPVCRCTIEDRMPVYDV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4961g00009 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 467 IPR013083 -
Gabi4961g00009 468 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 468 - -
Gabi4961g00009 468 Coils Coil 397 417 - -
Gabi4961g00009 468 Pfam Zinc finger, C3HC4 type (RING finger) 419 461 - -
Gabi4961g00009 468 SUPERFAMILY RING/U-box 412 463 - -
Gabi4961g00009 468 ProSiteProfiles Zinc finger RING-type profile. 421 456 IPR001841 -
Gabi4961g00009 468 Pfam Transmembrane Fragile-X-F protein 35 296 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4961g00009 Gabi-Chr4961 89135 98486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4961g00009 12 468 C3H Transcription Factor Family AT1G73950 63.441 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4961g00009 - - gmx:113000756 827.009