Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4961g00008 ATGCTGGTTCGAAGGAAAGTGATGAGCTGGAGAAGAGTGGCCAAATCCCTCCAAGCTCTGATAGCTCATACCTTGCTCTTCTCCTTCACTCTTTTGCTTGCTCTCAAGGTTGACCGTATCGTCCATTGCGCATGGTGGATTGTATTTTTTCCTCTATGGCTTTTTCATGCTGTGCTAGCACGAGGCAGGTTTTCCTTGCCTGCTCCTTCAATGCCTCATGATCGCCAATGGGCTCCTTGTCATTCAGTCATAGCAACACCATTACTTGTTGCATTCGAGCTACTTCTTTGTATACATCTCGGGAGCGGTTATGTGGTGAATTTAAGGATAGTCTTCTTGCCCCTGATAGCTTTTGAACTAGTGATTTTGATTGATAATATCAGGATGTGTAGGGCTTTGATGCCTGGCGATGATGAACATTTAACCGATGAAGCAGTATGGGAAACTCTTCCTCACTTCTGGATTTCGATATCCATGGTCTTCTTCATTGCTGCTACAGTGTTCACCCTTTTAAAGTTATGTGGTGATGTTAGTGCTCTGGGCTGGTGGGACTTATTTATTAACTACGGGGTTGGACAGTGCTTTGCATTTCTTGTTTGTACAAAAGGAGGCTTAGTTGTTTCCTCAGATGAAGATATGCAACAATATGGGTTCTGCAGTCTGCAGGACATTGGTGGGCATATTATGAAAATTCCATTCGTTGGTTTTCAAATACTTCTTTTTATGCATTTAGAGGGAACACCATCTGGTGCAAAAAAAATACCAAACTGGGTCATTTTTTGCCCCCTTTATTTGTTGCAAGGAGCTGGGGTTTTATTTGCAGCATATAGATTAATAGAGAAGATAGTTCTTTTACTCTACAGTGGAGATATTCCTAGAGGATACTCAGCTACGGCATCAAAATCCCGTGACTGCTTTGGGTTCTTGCATCATGGATCAAGGTTGCTAGGTTGGTGGTCAATAGATGAAGGGAGTAGAGAGGAAGAAGCTAGACTTTATTGTGCTGGGAGTTCTGGGTATAATACTTTCTCCCCTGATACGGTGAAGAAAATGCCTAGAGCAGATCTCGTTGAGGAGATTTGGAGACTTCAAGCTGCACTGGGTGAGCAGACAGAAGTTACAAAATGTACACAGGAGGAATATGAAAGGCTTCAAAATGAGAAGATCTTATGTAGAGTTTGCTTCGAACAGCAGATTAATGTGGTCCTACTTCCCTGCAGGCATCACATTCTTTGCAGCACTTGCTGCGAAAAATGTAAAAAGTGCCCTGTCTGCCGTTGCACCATTGAAGATCGGATGCCTGTATATGATGTGTAG 1317 0.4298 MLVRRKVMSWRRVAKSLQALIAHTLLFSFTLLLALKVDRIVHCAWWIVFFPLWLFHAVLARGRFSLPAPSMPHDRQWAPCHSVIATPLLVAFELLLCIHLGSGYVVNLRIVFLPLIAFELVILIDNIRMCRALMPGDDEHLTDEAVWETLPHFWISISMVFFIAATVFTLLKLCGDVSALGWWDLFINYGVGQCFAFLVCTKGGLVVSSDEDMQQYGFCSLQDIGGHIMKIPFVGFQILLFMHLEGTPSGAKKIPNWVIFCPLYLLQGAGVLFAAYRLIEKIVLLLYSGDIPRGYSATASKSRDCFGFLHHGSRLLGWWSIDEGSREEEARLYCAGSSGYNTFSPDTVKKMPRADLVEEIWRLQAALGEQTEVTKCTQEEYERLQNEKILCRVCFEQQINVVLLPCRHHILCSTCCEKCKKCPVCRCTIEDRMPVYDV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4961g00008 438 Pfam Zinc finger, C3HC4 type (RING finger) 389 431 - -
Gabi4961g00008 438 Coils Coil 367 387 - -
Gabi4961g00008 438 Pfam Transmembrane Fragile-X-F protein 35 266 IPR019396 -
Gabi4961g00008 438 SUPERFAMILY RING/U-box 382 433 - -
Gabi4961g00008 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 367 437 IPR013083 -
Gabi4961g00008 438 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 202 - -
Gabi4961g00008 438 ProSiteProfiles Zinc finger RING-type profile. 391 426 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4961g00008 Gabi-Chr4961 89135 98486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4961g00008 8 438 C3H Transcription Factor Family AT1G73950 67.426 0.0 612