Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4961g00005 ATGAGAGTTCACCGTAAGCAATTGAAAGCTCGTAGCTTTTTTGGTTATACTCTTCAACTTTTTATTTTTAATCCAATCAGACCATCGTGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAGAGTGCATCTGGAGCATATGGAAAAGCTATATGGGAAAGCGATCCTACCAGAGCTTGCCCAAATTGTCAACATGTTATTGACAACAGCGATGTAGCACAAGAGTGGCCTGGACTACCTAAAGGTGTTAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCTTGCAAAAGTTTGTGCTGGAAATTCAAAACCTCACCCTTTCATTGATGAATTTATTACTACTCTTGAAGATGATGATGGAATTTGTCATACTCATCCTCAACATTTACCAGGTGTCAAGCAAGATGGAAGTGCTTCTCACTTTTTCCACAGAGCAATCAAGGCTTATAATACTGGCAATCGAAAGCGTCGGAAGATATATGGTCAGGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGGACTAAACCTGTCATCTTGAATGGGGTTCAAAAAGGCTGTAAAAAGTTTTTGGTTCTGTATATGAGCCCTGTGAGAGAAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCATCTCGGAACAGAAGAGGATGAAAAGGATGGAGAGTATGTCATCTCTAAAGTGTTTTACCAGCAGCAGCAAGTCAAATTGGGTGAAAAAGATGACCAGGATATTCGAGAAACCACTGAAGCAACTATTGTGAAAGTTGATCCGGTCACACCCAAATCCGTCACTCCTGAACCTCCTCGTAATGAAAAGCGATGTTCTAATCTACATATAGGACAAGAATCGCATCATATTCCTCAGCATCCCGAAATGGATTGTGTTGATGGCATTCAAGCTGATGGTGAAGAGATTGCAAAATCTGATCAACTAATGGTAGAAACTCAAAATTATGAAGATAATATAGAAAATAATGCTGAAGACCCAAAGTGGTGGGATAGTGAGTCACAGAATCTGTTGGATTCACAACAACTTGTTGAAGCATTGTCCTTGTGTGATGATCTCCTTCAAAGCCAGTCTCCCAATAGGGATGGGAAAAATGGAGAACATGAAGAACGACCCAGTCTTGCTATTTATGCTCATCTAGGACCAGAGCATCTGAAGAAAGATATTGAAGAGTGCCAAAATCTTGTCCTTGACCCTGCTAATGTAGAGCTTGAGACACCACCTTCAGAGTTTCGGCTAAGTCAGCTGGAATTCGGTTCACAGGATAGCTATATTTCCTGGGGTGGCAGCAAGGCAATCAACTAA 1335 0.4067 MRVHRKQLKARSFFGYTLQLFIFNPIRPSWLVDKSRIATKIKSASGAYGKAIWESDPTRACPNCQHVIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVCAGNSKPHPFIDEFITTLEDDDGICHTHPQHLPGVKQDGSASHFFHRAIKAYNTGNRKRRKIYGQDFGDVRWHKTGRTKPVILNGVQKGCKKFLVLYMSPVREGKAEKTNWVMHQYHLGTEEDEKDGEYVISKVFYQQQQVKLGEKDDQDIRETTEATIVKVDPVTPKSVTPEPPRNEKRCSNLHIGQESHHIPQHPEMDCVDGIQADGEEIAKSDQLMVETQNYEDNIENNAEDPKWWDSESQNLLDSQQLVEALSLCDDLLQSQSPNRDGKNGEHEERPSLAIYAHLGPEHLKKDIEECQNLVLDPANVELETPPSEFRLSQLEFGSQDSYISWGGSKAIN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4961g00005 444 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 29 403 IPR044799 GO:0003700
Gabi4961g00005 444 FunFam NAC domain-containing protein 8 89 242 - -
Gabi4961g00005 444 Gene3D NAC domain 89 243 IPR036093 GO:0003677|GO:0006355
Gabi4961g00005 444 Pfam No apical meristem (NAM) protein 81 219 IPR003441 GO:0003677|GO:0006355
Gabi4961g00005 444 SUPERFAMILY NAC domain 65 238 IPR036093 GO:0003677|GO:0006355
Gabi4961g00005 444 ProSiteProfiles NAC domain profile. 80 238 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4961g00005 Gabi-Chr4961 68736 74830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4961g00005 52 245 NAC Transcription Factor Family AT1G28470 55.500 8.96e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4961g00005 NAM 3.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4961g00005 - - gmx:100787702 709.909