Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4961g00004 ATGGCTGGGCCTGGACCATCGTGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAGAGTGCATCTGGAGCATATGGAAAAGCTATATGGGAAAGCGATCCTACCAGAGCTTGCCCAAATTGTCAACATGTTATTGACAACAGCGATGTAGCACAAGAGTGGCCTGGACTACCTAAAGGTGTTAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCTTGCAAAAGTTTGTGCTGGAAATTCAAAACCTCACCCTTTCATTGATGAATTTATTACTACTCTTGAAGATGATGATGGAATTTGTCATACTCATCCTCAACATTTACCAGGTGTCAAGCAAGATGGAAGTGCTTCTCACTTTTTCCACAGAGCAATCAAGGCTTATAATACTGGCAATCGAAAGCGTCGGAAGATATATGGTCAGGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGGACTAAACCTGTCATCTTGAATGGGGTTCAAAAAGGCTGTAAAAAGTTTTTGGTTCTGTATATGAGCCCTGTGAGAGAAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCATCTCGGAACAGAAGAGGATGAAAAGGATGGAGAGTATGTCATCTCTAAAGTGTTTTACCAGCAGCAGCAAGTCAAATTGGGTGAAAAAGATGACCAGGATATTCGAGAAACCACTGAAGCAACTATTGTGAAAGTTGATCCGGTCACACCCAAATCCGTCACTCCTGAACCTCCTCGTAATGAAAAGCGATGTTCTAATCTACATATAGGACAAGAATCGCATCATATTCCTCAGCATCCCGAAATGGATTGTGTTGATGGCATTCAAGCTGATGGTGAAGAGATTGCAAAATCTGATCAACTAATGGTAGAAACTCAAAATTATGAAGATAATATAGAAAATAATGCTGAAGACCCAAAGTGGTGGGATAGTGAGTCACAGAATCTGTTGGATTCACAACAACTTGTTGAAGCATTGTCCTTGTGTGATGATCTCCTTCAAAGCCAGTCTCCCAATAGGGATGGGAAAAATGGAGAACATGAAGAACGACCCAGTCTTGCTATTTATGCTCATCTAGGACCAGAGCATCTGAAGAAAGATATTGAAGAGTGCCAAAATCTTGTCCTTGACCCTGCTAATGTAGAGCTTGAGACACCACCTTCAGAGTTTCGGCTAAGTCAGCTGGAATTCGGTTCACAGGATAGCTATATTTCCTGGGGTGGCAGCAAGGCAATCAACTAA 1269 0.4153 MAGPGPSWLVDKSRIATKIKSASGAYGKAIWESDPTRACPNCQHVIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVCAGNSKPHPFIDEFITTLEDDDGICHTHPQHLPGVKQDGSASHFFHRAIKAYNTGNRKRRKIYGQDFGDVRWHKTGRTKPVILNGVQKGCKKFLVLYMSPVREGKAEKTNWVMHQYHLGTEEDEKDGEYVISKVFYQQQQVKLGEKDDQDIRETTEATIVKVDPVTPKSVTPEPPRNEKRCSNLHIGQESHHIPQHPEMDCVDGIQADGEEIAKSDQLMVETQNYEDNIENNAEDPKWWDSESQNLLDSQQLVEALSLCDDLLQSQSPNRDGKNGEHEERPSLAIYAHLGPEHLKKDIEECQNLVLDPANVELETPPSEFRLSQLEFGSQDSYISWGGSKAIN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4961g00004 422 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Gabi4961g00004 422 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Gabi4961g00004 422 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Gabi4961g00004 422 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 7 381 IPR044799 GO:0003700
Gabi4961g00004 422 FunFam NAC domain-containing protein 8 67 220 - -
Gabi4961g00004 422 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4961g00004 Gabi-Chr4961 68736 75138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4961g00004 30 223 NAC Transcription Factor Family AT1G28470 55.500 5.60e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4961g00004 NAM 2.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4961g00004 - - gmx:100787702 712.22