Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4961g00001 ATGGAAGTTGGTAGTTGCACAGACGAAACCACCACAACCAGTGATTCCCTTTCTGTATCCCTTTTACCGGCGAAGATATCTTCACCGACGCCCAACACGCTAAGCCGAGTCGGCAGTGGCGCCAGCGCCGTCGTGGACCCCGAAGTTTGCGGCGGCTCCGGTGAGGCAGAATCCAGGAAACTTCCGTCGTCGAAATACAAAGGTGTCGTGCCACAGCCCAACGGCCGGTGGGGTGCTCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGCACCTTCAACGATGAAGACGAAGCCGCAAGAGCATACGACATCGCCGCCCAGAGGTTCCGTGGCAAAGACGCCGTCACTAACTTCAAGCCCCTCGCCGGCGCCGGAAACGATTCCGACGACGAGGAAACCGAGTTCCTCATCTCGCATTCCAAATTCGAGATCGTTGACATGCTCCGAAAGCACACCTACCACGACGAGCTCCAACAGAGCAAGCGCGGCGGCATGAAGCAGCGGCGCAACGGCGAAACTGCAGAAACGGCGCCGTCGCGAGACGCGTGCGATATGAAAACGCGTGCGCATCTGTTCGAGAAAACCGTTACGCCGAGTGACGTGGGGAAGTTGAATCGGTTGGTGATACCGAAACAGCACGCGGAGAAACACTTTCCCTTAGGAGGTCGGAGCTCGCCGTGCGTGGCGGAGACGGCGGCCGCGGCGAAGGGTGTGCTTTTGAATTTCGAGGACATTGGAGGGAAAGTGTGGCGGTTTCGTTACTCATATTGGAACAGTAGCCAGAGCTACGTGCTGACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAGCCTTCGGGCCGGTGATGCGGTTCGGTTCTACAGATCGACCGGACCGGACAGGCAGTTCTTCATTGACTGCAAGGCCAGGAGTACTAGTATTTGTGAGGTTGGTACTAATAATGGTGATATGTTTATTCCTGTCGGACCGGTGGTTGAACCGGTTCATATGGTTCGGCTTTTTGGGGTCAACCTCTTGAAACTACCTGGTTCTGATGGTGTTGTTGGTGGGTGTAATGGGAAGAGGAAAGAGTTGAATCTCTTTACCTTAGAATGTAGCAAGAAGCTAAAGATAATTGGAGCTTTGTAA 1131 0.5491 MEVGSCTDETTTTSDSLSVSLLPAKISSPTPNTLSRVGSGASAVVDPEVCGGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNDEDEAARAYDIAAQRFRGKDAVTNFKPLAGAGNDSDDEETEFLISHSKFEIVDMLRKHTYHDELQQSKRGGMKQRRNGETAETAPSRDACDMKTRAHLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLGGRSSPCVAETAAAAKGVLLNFEDIGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDAVRFYRSTGPDRQFFIDCKARSTSICEVGTNNGDMFIPVGPVVEPVHMVRLFGVNLLKLPGSDGVVGGCNGKRKELNLFTLECSKKLKIIGAL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4961g00001 376 FunFam AP2 domain-containing protein RAP2.8 64 121 - -
Gabi4961g00001 376 MobiDBLite consensus disorder prediction 156 181 - -
Gabi4961g00001 376 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 60 349 IPR044800 GO:0003700
Gabi4961g00001 376 SUPERFAMILY DNA-binding domain 64 120 IPR016177 GO:0003677
Gabi4961g00001 376 SMART B3_2 193 304 IPR003340 GO:0003677
Gabi4961g00001 376 CDD AP2 64 119 IPR001471 GO:0003700|GO:0006355
Gabi4961g00001 376 ProSiteProfiles B3 DNA-binding domain profile. 193 305 IPR003340 GO:0003677
Gabi4961g00001 376 Pfam B3 DNA binding domain 193 294 IPR003340 GO:0003677
Gabi4961g00001 376 CDD B3_DNA 191 299 IPR003340 GO:0003677
Gabi4961g00001 376 SMART rav1_2 65 126 IPR001471 GO:0003700|GO:0006355
Gabi4961g00001 376 ProSiteProfiles AP2/ERF domain profile. 65 120 IPR001471 GO:0003700|GO:0006355
Gabi4961g00001 376 Pfam AP2 domain 64 112 IPR001471 GO:0003700|GO:0006355
Gabi4961g00001 376 SUPERFAMILY DNA-binding pseudobarrel domain 189 303 IPR015300 -
Gabi4961g00001 376 Gene3D AP2/ERF domain 64 121 IPR036955 GO:0003700|GO:0006355
Gabi4961g00001 376 Gene3D - 182 313 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4961g00001 Gabi-Chr4961 7904 9204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4961g00001 5 376 B3 DNA Binding Superfamily AT1G25560 56.995 7.50e-135 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Gabi4961g00001 B3 1.2e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4961g00001 K09287 - gmx:100789009 517.694