Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4957g00003 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTACATATATGATTATTTAGTGAAGAAAAAGTTGCATAACACTGCCAAGTCATTCATGATGGAAGGGAAGGTTGCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGACATTTTTATTGCGAGGACAAATGATAAACATTCTGAGGCTGCTAATGCATATTTACAGGTACCTCCCTTCTCTTTCCGTGGTTTTAACGGTGTTAGATATAAAAATGTTCATGAGCTTTCACCTAATAGTTTAAGCCTTCACCAAAATGGTAGTTTGTTGATAATATTTATATCAAGTAGTTGTTTTCCCTTTTTTGGTGAGCTGCAGGCTCAACATATTAAAGCGAAGGAACAACAACAACAACAACTGCAAATGCAGCAGTTGCAACTAGTACGTCAGGCTCAGCTGCAAAGAAGAGATCCTAATCATCCTCCCCTTGGAGGTTCTGTAAATGCTATTACTACTGAAGGAGTGCTTGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGAACGGATGAAGCAAAACCCCATGGATACAGAGACATCCCAACCACTTCTAGATGCTAGAATGGCCCTTTTGAAATCAACAAACCATCCTGGTCAGATGGTTCAAGGAAACTCAGGAAGTGTGACAGCAGCTTTGCAGCAAATCCAGGCTCGAACTCAGCAAACCCCTGAAATCAAAGGTGAAGTCAATATGGGCACCATACAGAGATCCTCGCCTATGGATCCTTCTTCAATTTATGGGCAGGGAGGAATCCAGTCAAAGCCTGGAATCACCAATGCAGGACTAACTCCAGGAGTTGGTGGTCTGACATTGAAAGGATGGCCTTTAACTGGCATAGATCAAATGCGTCCTGGTTTTGGAGCACAAGTTCAAAAGCCTCTCCTTCATGGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAGCAGCTCCTTGCACAGGTCCAGGCACAAGGAAATATTGGCAATTCGGCAATGTATGGAGATATGGACCCACAACGATTAAGGGGATTAACTAGGGGAACTTTGAATGCGAAAGACAGTCAACCAATTGCAAATGATGGATCAATAGGGTCTCCAATGCAATCCACTTCATCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAAGATCCTTTGCATCCACAGCAACTGAATCACCGAAAAAGGAAAGGGCCTACATCTTCTGGAGCTGCTAACAGTACTGGTACAGGAAATACACTTGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACACCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTGCTGGTGTAGCCAAAGGTTTGATAATGTATGGTACTGATGGAGGTGGTGGTCTTGCATCTTCCAACCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAATGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTTAGCGAAGTTAGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAAAAGGTTGTTTTGTGGAACATGGAAACACTGCAAACAGAGAGCACTTCGGAGGAGCACACTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAACTGGCAACGTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTGCAGATCCAAGCTTTTCGATACAGGCATATAGTGGTCATGCGTCACATGTGCGGTCCCTTGATTTCCACCCAAAGAAAAACGATTTTTTCTGTTCTTGTGATGCTAACAATGAGATTCGCTTCTGGAATATTAGTCAATATTCTTGTACTCGTGCTTTTAAGGGAGGATCCACGCAAGTGAGGTTTCAGCCAAGGATTGGACAACGTTTGGCTGCAGCATCTGGCAGTGTTGTGTCTCTCTTTGATGTGGAGACTGACAGGCAGTTGCACTCATTACAGGGACATTCTACAGATGTACAGTGTGTCTGCTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTGTCTTGCCAATGGAAATTGCGTTCACGAACTTAGTTCCAGTGGAAACATGTTTCATTCTTGCGTTTTTCACCCGAGCTACTCCAATCTCATGGTCATTGGAGGATACCAGTCATTGGAGCTGTGGGACATGACCGAGAATAAATGTATGACAAAACCAGCTCATGAGTGTGTGATATCAGCTCTAGCACAGTCACCAGTGACGGGGATGGTTGCTTCAGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAA 2499 0.4354 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMMEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNDKHSEAANAYLQVPPFSFRGFNGVRYKNVHELSPNSLSLHQNGSLLIIFISSSCFPFFGELQAQHIKAKEQQQQQLQMQQLQLVRQAQLQRRDPNHPPLGGSVNAITTEGVLGQSTATALAAKMYEERMKQNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPEIKGEVNMGTIQRSSPMDPSSIYGQGGIQSKPGITNAGLTPGVGGLTLKGWPLTGIDQMRPGFGAQVQKPLLHGANQFQLLPQQQQQLLAQVQAQGNIGNSAMYGDMDPQRLRGLTRGTLNAKDSQPIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLNHRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVAKGLIMYGTDGGGGLASSNQLLQDDMEHFGDVGSLDDNVESFLSQDDGDGRDLFGTLKWNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTSEEHTLIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSIQAYSGHASHVRSLDFHPKKNDFFCSCDANNEIRFWNISQYSCTRAFKGGSTQVRFQPRIGQRLAAASGSVVSLFDVETDRQLHSLQGHSTDVQCVCWDTNGDYLASVSQESVKVWCLANGNCVHELSSSGNMFHSCVFHPSYSNLMVIGGYQSLELWDMTENKCMTKPAHECVISALAQSPVTGMVASASHDKSVKIWK 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4957g00003 832 ProSitePatterns Trp-Asp (WD) repeats signature. 570 584 IPR019775 -
Gabi4957g00003 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 625 IPR001680 GO:0005515
Gabi4957g00003 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 593 625 - -
Gabi4957g00003 832 Gene3D - 678 832 IPR015943 GO:0005515
Gabi4957g00003 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 636 678 IPR001680 GO:0005515
Gabi4957g00003 832 MobiDBLite consensus disorder prediction 421 455 - -
Gabi4957g00003 832 Gene3D - 524 677 IPR015943 GO:0005515
Gabi4957g00003 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 551 586 - -
Gabi4957g00003 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 592 IPR001680 GO:0005515
Gabi4957g00003 832 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 832 IPR044716 GO:0003714
Gabi4957g00003 832 SUPERFAMILY WD40 repeat-like 545 832 IPR036322 GO:0005515
Gabi4957g00003 832 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gabi4957g00003 832 PRINTS G protein beta WD-40 repeat signature 570 584 IPR020472 -
Gabi4957g00003 832 PRINTS G protein beta WD-40 repeat signature 819 832 IPR020472 -
Gabi4957g00003 832 PRINTS G protein beta WD-40 repeat signature 612 626 IPR020472 -
Gabi4957g00003 832 Pfam WD domain, G-beta repeat 556 583 IPR001680 GO:0005515
Gabi4957g00003 832 Pfam WD domain, G-beta repeat 595 625 IPR001680 GO:0005515
Gabi4957g00003 832 Pfam WD domain, G-beta repeat 802 832 IPR001680 GO:0005515
Gabi4957g00003 832 Pfam WD domain, G-beta repeat 714 748 IPR001680 GO:0005515
Gabi4957g00003 832 Pfam WD domain, G-beta repeat 634 669 IPR001680 GO:0005515
Gabi4957g00003 832 CDD WD40 547 832 - -
Gabi4957g00003 832 SMART Lish 8 40 IPR006594 GO:0005515
Gabi4957g00003 832 MobiDBLite consensus disorder prediction 369 461 - -
Gabi4957g00003 832 Pfam LisH 10 36 IPR006594 GO:0005515
Gabi4957g00003 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 800 832 - -
Gabi4957g00003 832 SMART WD40_4 586 625 IPR001680 GO:0005515
Gabi4957g00003 832 SMART WD40_4 711 749 IPR001680 GO:0005515
Gabi4957g00003 832 SMART WD40_4 629 669 IPR001680 GO:0005515
Gabi4957g00003 832 SMART WD40_4 672 708 IPR001680 GO:0005515
Gabi4957g00003 832 SMART WD40_4 793 832 IPR001680 GO:0005515
Gabi4957g00003 832 SMART WD40_4 544 583 IPR001680 GO:0005515
Gabi4957g00003 832 SMART WD40_4 752 791 IPR001680 GO:0005515
Gabi4957g00003 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 800 832 IPR001680 GO:0005515
Gabi4957g00003 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 636 671 - -
Gabi4957g00003 832 MobiDBLite consensus disorder prediction 369 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4957g00003 Gabi-Chr4957 55703 79186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4957g00003 545 795 U-box Gene Family AT2G33340 27.509 1.88e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gabi4957g00003 WD40 0.02 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4957g00003 - - var:108326218 1332.78