Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi4957g00002 | ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTACATATATGATTATTTAGTGAAGAAAAAGTTGCATAACACTGCCAAGTCATTCATGATGGAAGGGAAGGTTGCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGACATTTTTATTGCGAGGACAAATGATAAACATTCTGAGGCTGCTAATGCATATTTACAGGTACCTCCCTTCTCTTTCCGTGGTTTTAACGGTGTTAGATATAAAAATGTTCATGAGCTTTCACCTAATAGTTTAAGCCTTCACCAAAATGGTAGTTTGTTGATAATATTTATATCAAGTAGTTGTTTTCCCTTTTTTGGTGAGCTGCAGGCTCAACATATTAAAGCGAAGGAACAACAACAACAACAACTGCAAATGCAGCAGTTGCAACTAGTACGTCAGGCTCAGCTGCAAAGAAGAGATCCTAATCATCCTCCCCTTGGAGGTTCTGTAAATGCTATTACTACTGAAGGAGTGCTTGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGAACGGATGAAGCAAAACCCCATGGATACAGAGACATCCCAACCACTTCTAGATGCTAGAATGGCCCTTTTGAAATCAACAAACCATCCTGGTCAGATGGTTCAAGGAAACTCAGGAAGTGTGACAGCAGCTTTGCAGCAAATCCAGGCTCGAACTCAGCAAACCCCTGAAATCAAAGGTGAAGTCAATATGGGCACCATACAGAGATCCTCGCCTATGGATCCTTCTTCAATTTATGGGCAGGGAGGAATCCAGTCAAAGCCTGGAATCACCAATGCAGGACTAACTCCAGGAGTTGGTGGTCTGACATTGAAAGGATGGCCTTTAACTGGCATAGATCAAATGCGTCCTGGTTTTGGAGCACAAGTTCAAAAGCCTCTCCTTCATGGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAGCAGCTCCTTGCACAGGTCCAGGCACAAGGAAATATTGGCAATTCGGCAATGTATGGAGATATGGACCCACAACGATTAAGGGGATTAACTAGGGGAACTTTGAATGCGAAAGACAGTCAACCAATTGCAAATGATGGATCAATAGGGTCTCCAATGCAATCCACTTCATCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAAGATCCTTTGCATCCACAGCAACTGAATCACCGAAAAAGGAAAGGGCCTACATCTTCTGGAGCTGCTAACAGTACTGGTACAGGAAATACACTTGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACACCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTGCTGGTGTAGCCAAAGGTTTGATAATGTATGGTACTGATGGAGGTGGTGGTCTTGCATCTTCCAACCAGCTGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAATGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTTAGCGAAGTTAGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAAAAGGTTGTTTTGTGGAACATGGAAACACTGCAAACAGAGAGCACTTCGGAGGAGCACACTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAACTGGCAACGTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTGCAGATCCAAGCTTTTCGATACAGGCATATAGTGGTCATGCGTCACATGTGCGGTCCCTTGATTTCCACCCAAAGAAAAACGATTTTTTCTGTTCTTGTGATGCTAACAATGAGATTCGCTTCTGGAATATTAGTCAATATTCTTGTACTCGTGCTTTTAAGGGAGGATCCACGCAAGTGAGGTTTCAGCCAAGGATTGGACAACGTTTGGCTGCAGCATCTGGCAGTGTTGTGTCTCTCTTTGATGTGGAGACTGACAGGCAGTTGCACTCATTACAGGGACATTCTACAGATGTACAGTGTGTCTGCTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTGTCTTGCCAATGGAAATTGCGTTCACGAACTTAGTTCCAGTGGAAACATGTTTCATTCTTGCGTTTTTCACCCGAGCTACTCCAATCTCATGGTCATTGGAGGATACCAGTCATTGGAGCTGTGGGACATGACCGAGAATAAATGTATGACAAAACCAGCTCATGAGTGTGTGATATCAGCTCTAGCACAGTCACCAGTGACGGGGATGGTTGCTTCAGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAA | 2493 | 0.4352 | MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMMEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNDKHSEAANAYLQVPPFSFRGFNGVRYKNVHELSPNSLSLHQNGSLLIIFISSSCFPFFGELQAQHIKAKEQQQQQLQMQQLQLVRQAQLQRRDPNHPPLGGSVNAITTEGVLGQSTATALAAKMYEERMKQNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPEIKGEVNMGTIQRSSPMDPSSIYGQGGIQSKPGITNAGLTPGVGGLTLKGWPLTGIDQMRPGFGAQVQKPLLHGANQFQLLPQQQQQLLAQVQAQGNIGNSAMYGDMDPQRLRGLTRGTLNAKDSQPIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLNHRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVAKGLIMYGTDGGGGLASSNQLDDMEHFGDVGSLDDNVESFLSQDDGDGRDLFGTLKWNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTSEEHTLIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSIQAYSGHASHVRSLDFHPKKNDFFCSCDANNEIRFWNISQYSCTRAFKGGSTQVRFQPRIGQRLAAASGSVVSLFDVETDRQLHSLQGHSTDVQCVCWDTNGDYLASVSQESVKVWCLANGNCVHELSSSGNMFHSCVFHPSYSNLMVIGGYQSLELWDMTENKCMTKPAHECVISALAQSPVTGMVASASHDKSVKIWK | 830 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi4957g00002 | 830 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 568 | 582 | IPR019775 | - | |
| Gabi4957g00002 | 830 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 634 | 676 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 549 | 584 | - | - | |
| Gabi4957g00002 | 830 | CDD | WD40 | 545 | 830 | - | - | |
| Gabi4957g00002 | 830 | PANTHER | TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 | 1 | 830 | IPR044716 | GO:0003714 | |
| Gabi4957g00002 | 830 | SMART | WD40_4 | 542 | 581 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | SMART | WD40_4 | 584 | 623 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | SMART | WD40_4 | 670 | 706 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | SMART | WD40_4 | 709 | 747 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | SMART | WD40_4 | 791 | 830 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | SMART | WD40_4 | 750 | 789 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | SMART | WD40_4 | 627 | 667 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | PRINTS | G protein beta WD-40 repeat signature | 610 | 624 | IPR020472 | - | |
| Gabi4957g00002 | 830 | PRINTS | G protein beta WD-40 repeat signature | 568 | 582 | IPR020472 | - | |
| Gabi4957g00002 | 830 | PRINTS | G protein beta WD-40 repeat signature | 817 | 830 | IPR020472 | - | |
| Gabi4957g00002 | 830 | MobiDBLite | consensus disorder prediction | 421 | 455 | - | - | |
| Gabi4957g00002 | 830 | Pfam | WD domain, G-beta repeat | 632 | 667 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | Pfam | WD domain, G-beta repeat | 554 | 581 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | Pfam | WD domain, G-beta repeat | 593 | 623 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | Pfam | WD domain, G-beta repeat | 800 | 830 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | Pfam | WD domain, G-beta repeat | 712 | 746 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | Gene3D | - | 677 | 830 | IPR015943 | GO:0005515 | |
| Gabi4957g00002 | 830 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 798 | 830 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 798 | 830 | - | - | |
| Gabi4957g00002 | 830 | SUPERFAMILY | WD40 repeat-like | 543 | 830 | IPR036322 | GO:0005515 | |
| Gabi4957g00002 | 830 | ProSiteProfiles | LIS1 homology (LisH) motif profile. | 8 | 40 | IPR006594 | GO:0005515 | |
| Gabi4957g00002 | 830 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 634 | 669 | - | - | |
| Gabi4957g00002 | 830 | Gene3D | - | 513 | 676 | IPR015943 | GO:0005515 | |
| Gabi4957g00002 | 830 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 591 | 623 | - | - | |
| Gabi4957g00002 | 830 | SMART | Lish | 8 | 40 | IPR006594 | GO:0005515 | |
| Gabi4957g00002 | 830 | MobiDBLite | consensus disorder prediction | 369 | 461 | - | - | |
| Gabi4957g00002 | 830 | Pfam | LisH | 10 | 36 | IPR006594 | GO:0005515 | |
| Gabi4957g00002 | 830 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 549 | 590 | IPR001680 | GO:0005515 | |
| Gabi4957g00002 | 830 | MobiDBLite | consensus disorder prediction | 369 | 414 | - | - | |
| Gabi4957g00002 | 830 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 591 | 623 | IPR001680 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi4957g00002 | Gabi-Chr4957 | 55703 | 79186 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi4957g00002 | 543 | 793 | U-box Gene Family | AT2G33340 | 27.509 | 1.77e-16 | 81.3 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | LUG | Gabi4957g00002 | WD40 | 0.02 | CL0186 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi4957g00002 | - | - | var:108326218 | 1324.3 |