Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4954g00001 ATGGATCCTAATGGTTCTGTGGATGATAAGTGTGAGAGTAGACTTTATATCGGTAACCTTGATCTCAGAATTACAGAAGCTGTTCTGCTGAAAATGTTTTCTCCCTTTGGAAAGATTGTTTCTGAGGACTTCTTGTGGCACACTCGTGGCCCAAAACGTGGGGAACCACGTGGTTTTGCTTTTGTACAGTATAGCACAAAAGAGGAAGCTGAATTGGCCAAGGAGAAAATGCATGGAAGGTTAGCTTGTGGCCGGCCATTGGTTGTTCGTCTTGCCGGTGAGAAGTACATGTTGGAAACAGCTGATAAGTCTACAAAAGCTGCACGTGAAGGGCACAAGATGCATCTTAGTGGTGGTGCCATGGGACAGTCAAGTCGTAGTGCAAAAATAGCTGCAATAAAGAATAAGTTGAAATCCTTAGAAGAGGAGAGCTCTAGGACCAAGAAGCAGAAGCAAAATGATGATGTTTCTTAA 474 0.4346 MDPNGSVDDKCESRLYIGNLDLRITEAVLLKMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFVQYSTKEEAELAKEKMHGRLACGRPLVVRLAGEKYMLETADKSTKAAREGHKMHLSGGAMGQSSRSAKIAAIKNKLKSLEEESSRTKKQKQNDDVS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4954g00001 157 Gene3D - 10 119 IPR012677 -
Gabi4954g00001 157 MobiDBLite consensus disorder prediction 135 157 - -
Gabi4954g00001 157 SUPERFAMILY RNA-binding domain, RBD 7 97 IPR035979 GO:0003676
Gabi4954g00001 157 CDD RRM_RBM18 14 92 IPR039157 -
Gabi4954g00001 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Gabi4954g00001 157 Coils Coil 130 150 - -
Gabi4954g00001 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Gabi4954g00001 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 51 150 - -
Gabi4954g00001 157 MobiDBLite consensus disorder prediction 103 157 - -
Gabi4954g00001 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4954g00001 Gabi-Chr4954 2514 7283 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4954g00001 13 95 Eukaryotic Initiation Factors Gene Family AT3G16380 38.554 1.22e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4954g00001 K24527 - gmx:100806572 269.626