Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4952g00002 ATGAGCGTCATTGACATTCTGACCAGAGTTGACTCCATTTGCAAGAAGTACGACAAATACGACGTCGAAAAGCTCAACGATTCCAATATCTCCGGCGACGATGCCTTCGTCAGACTCTACGCCGTCGTCAACGCCGACATCGAGGCATTGCTTCAGAAAGCTGAAACCGCTTCCAAGGAGAAAGGTAAGGCATCTGCTGTAGCGATCAATGCAGAAATTCGTCGTACCAAGGCTCGGTTGCTTGAGGAGGTTCCCAAGTTGCAGAGGTTGGCTGTAAAAAAGGTGAAGGGGCTTTCGTCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCGGAGAGAATCCAAGCTATACCAGATGGGACTCCTGCTGCGCCAAAACAAACTGGGGGCTGGGCAGCTTCTGCCTCACGTGCTGAAATTAAATTCGATTCAGATGGACGATTTGATGATGAATACTTCCAACAAACTAAAGAATCAAGTCAATTCAGGCAGGAATATGAAATGCGTAGAATAAAACAGGATCAAGGTTTGGATATGATTGCAGAAGGATTGGATACATTGAAAGACATGGCGCATGATATGAATGAGGAACTGGATAGACAAGTTCCGCTGATGGATGAGATTGACACTAAGGTGGATAAGGCATCCTCTGACCTTAAGAATACCAATGTTAGACTTAAAGACACAGTGAACCAGCTTCGATCCAGTCGAAACTTCTGTATCGATATTGTTTTGTTGATTATAATTCTGGGAATTGCTGCCTACTTATACAATGTACTAAAGAAATGA 798 0.4411 MSVIDILTRVDSICKKYDKYDVEKLNDSNISGDDAFVRLYAVVNADIEALLQKAETASKEKGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPAAPKQTGGWAASASRAEIKFDSDGRFDDEYFQQTKESSQFRQEYEMRRIKQDQGLDMIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4952g00002 265 Pfam SNARE domain 207 256 IPR000727 -
Gabi4952g00002 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi4952g00002 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Gabi4952g00002 265 Gene3D - 170 231 - -
Gabi4952g00002 265 CDD SNARE_Qc 175 230 - -
Gabi4952g00002 265 PANTHER SYNTAXIN 48 252 IPR045242 -
Gabi4952g00002 265 SMART tSNARE_6 165 232 IPR000727 -
Gabi4952g00002 265 Coils Coil 40 60 - -
Gabi4952g00002 265 FunFam Putative syntaxin-71-like 170 231 - -
Gabi4952g00002 265 SUPERFAMILY SNARE fusion complex 162 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4952g00002 Gabi-Chr4952 78928 82819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4952g00002 1 264 SNARE and Associated Proteins AT3G09740 78.195 1.87e-155 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4952g00002 K08506 - gmx:100819272 463.766