Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4952g00001 ATGGACAAAGATCCCAATTTCGAAATCCAACTCCCTCCTGGTTTTAGATTCTACCCTTCTGACGAGGAGCTCATTGTTCACTATCTGAGAAACAAAGTGAATTCATGTCCCCTTCCTGCTTCATTCATTGCAGAAATAGATCTTTACAAATATAATCCATGGGAGCTTCCAAGCAAAGCTTTGTTTGGAGAAAATGAGTGGTATTTCTTTACCCCTCGGGATAGAAAGTATCCCAATGGAGTTAGGCCTAATAGAGCAGCTGGTTCAGGTTATTGGAAGACCACAGGGACTGAAAAACCAATTCTTACTTCTTGTGGAGATAAGAATATTGGACTTAAGAAGGCCCTTGTTTTCTACAAGGGACATCCCCCAAAAGGATATAAAACTGATTGGATCATGCATGAGTATAAGTTGCACGATTCAGTTATCTTGAATTCCAAGCTAAAAGGGTCTATGAGATTGGATGAGTGTGTGCTATGTCGAGTTCAACTAAAAACCAGCAGCCCAAGAAGCACATGGGAAGATTCAAATGAACCTAGTTATGATCCAACAAGCTATTTTCAACAAATGAATGGAAACTCTAATCCTGAACTAGTAAAAAACTACGTGGGCAATGATCTTCCAATGTTACCCTATATTCTGGCTTCTAAGTATACTCTGCCAAATTCTATTGGTACAGCCTCAAGAACAGGCTTTCATACAGAAGCATATACTTCACCCCATGAAGATGACTTAACTGGAGCACAGTTCTTAGCATCTGTTTCGGAGAGCTTGCTTAATCCACTGAAGAGAAAAGCTGTTGAAGAAAATCAGTTGGACTTTTATGCTCCACAGAATAAAAAGATAAGCGAAGTTGATGATGAGAAGCAAAGACTTGAGACAGATGTAAGCAAAGGCTACAATTACCACAACTTTGATCAGTGGACTTCTGCTATACAACCTCAAGAGCTTAATAACTTAGCCTTTACAGGATGTATATATGATTAG 987 0.3921 MDKDPNFEIQLPPGFRFYPSDEELIVHYLRNKVNSCPLPASFIAEIDLYKYNPWELPSKALFGENEWYFFTPRDRKYPNGVRPNRAAGSGYWKTTGTEKPILTSCGDKNIGLKKALVFYKGHPPKGYKTDWIMHEYKLHDSVILNSKLKGSMRLDECVLCRVQLKTSSPRSTWEDSNEPSYDPTSYFQQMNGNSNPELVKNYVGNDLPMLPYILASKYTLPNSIGTASRTGFHTEAYTSPHEDDLTGAQFLASVSESLLNPLKRKAVEENQLDFYAPQNKKISEVDDEKQRLETDVSKGYNYHNFDQWTSAIQPQELNNLAFTGCIYD 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4952g00001 328 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Gabi4952g00001 328 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Gabi4952g00001 328 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Gabi4952g00001 328 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Gabi4952g00001 328 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4952g00001 Gabi-Chr4952 75683 77013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4952g00001 10 174 NAC Transcription Factor Family AT1G61110 66.474 4.10e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4952g00001 NAM 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4952g00001 - - gmx:100788799 496.123