Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4947g00009 ATGATTAACAGTGGAGTGTGCAGTTTTCGCACGTGCCTCCATTTCCCGGAGAGACCACTATTCCGAGAAGCTCCGCTCTCACTCGGTTGCCGGCGGCGGTTTCTCGTCACTGCCTCCGAAACGAAGAAGAAAGAGAAGGTGGTAGTGATTTCTGGACCCACCGGTTCCGGCAAGAGCCGCCTCGCCTTGGAACTCGCGAAGCGCCTCAACGGCGAAATCGTTAGTGCGGACTCTGTTCAGGTATATCGGGGTCTTGATGTTGGATCTGCAAAACCTTCCCCAAATGAAAGAAAGGAGGTACCGCATCATCTGGTTGACATACTGCACCCATCTGAAGACTACTCCGTTGGACAGTTTTTTGAGGACGCAAGGCAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTCGTTGGGGGCACTGGGTTGTATTTAAGATGGTTAATATATGGAAAGCCAGATGTGCCTATAGCCTCTCCAGAGATCACATCTGAAGTAGACCTAGAGTTAGCTGACCTACAGAGAAATGAAGACTGGGATACAGCTGTGCAATTGGTGGTAAAATCTGGTGATCCAAAGGCCCAACTTTTACCGCTGAATGATTGGTACCGGTTACGGCGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCTTTTCGGGTACCATATGATTCTTTCAGGAAACAGGGTGATTGTAGTGTTGCTGATGGTTCTGAGTCATCTGATGTGAGCATAAATGCAATGGAAGAAACCAATTCGTCAGAGTTAGACTATGAATTTATGTGTTTTTTCCTTTCTAGCCAAAGACTTGACCTCTATAGATCAATTGATTATCGGTGTGAAGATATGCTATTAGGAAGGGATGGGATTTTGTCTGAGGCTCAATGGCTTCTTGATACAGGTCTTCATCCAAACTCCAATTCTGCAACACGAGCAATTGGATACAGACAAGCCATGGAGTACTTACTAAGATGCAGACAACAAGGGGGCCAGAGTTCAGTTGGGGAATTTTACAAATTCTTGTCTGAATTTCAGAGAGCATCACGGAATTTTGCGAAAAGACAATTGACATGGTTTCGCAACGAACGTATATACCACTGGCTTGATGCTTCTAAACCTCTGGAAACCGTTCTCAACTTCATTCTTAATGCATACCATGATTGGAATGGAAGTCTTCTTGTGCCTGAACACCTAAGAATGTTGAAAGATATTAATGGCCGAGAAACTACTAAACTTAAGTCTTATCGCACCCAAAATAGACATTTAGTGAACAGGGAAGATTGTTCTGATATTCTGGACTGGATAAGGAAGACTCAAAGTTGA 1338 0.4462 MINSGVCSFRTCLHFPERPLFREAPLSLGCRRRFLVTASETKKKEKVVVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSPNERKEVPHHLVDILHPSEDYSVGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWLIYGKPDVPIASPEITSEVDLELADLQRNEDWDTAVQLVVKSGDPKAQLLPLNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFRKQGDCSVADGSESSDVSINAMEETNSSELDYEFMCFFLSSQRLDLYRSIDYRCEDMLLGRDGILSEAQWLLDTGLHPNSNSATRAIGYRQAMEYLLRCRQQGGQSSVGEFYKFLSEFQRASRNFAKRQLTWFRNERIYHWLDASKPLETVLNFILNAYHDWNGSLLVPEHLRMLKDINGRETTKLKSYRTQNRHLVNREDCSDILDWIRKTQS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4947g00009 445 Hamap tRNA dimethylallyltransferase [miaA]. 47 384 IPR018022 GO:0008033
Gabi4947g00009 445 Gene3D - 44 436 IPR027417 -
Gabi4947g00009 445 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 380 IPR039657 -
Gabi4947g00009 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 206 IPR027417 -
Gabi4947g00009 445 FunFam tRNA dimethylallyltransferase 9 155 226 - -
Gabi4947g00009 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 384 IPR027417 -
Gabi4947g00009 445 Pfam IPP transferase 80 367 - -
Gabi4947g00009 445 Gene3D - 156 226 - -
Gabi4947g00009 445 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 224 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4947g00009 Gabi-Chr4947 118912 124894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4947g00009 50 358 C2H2 Transcription Factor Family AT2G27760 26.480 2.76e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4947g00009 K00791 - gmx:100808814 764.607