Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4947g00005 ATGAGGGGAGGAGGAGGTGGTGGTGAGATAGTGGAGGTTCAAGGTGGTCACATTGTGAGGTCCACCGGAAGGAAGGACCGTCACAGCAAGGTTTGCACGGCGAAAGGGCCGAGGGACCGCCGTGTGCGACTCTCGGCCCATACCGCGATCCAATTCTACGATGTGCAAGATCGATTGGGCTACGACCGGCCCAGTAAGGCCGTGGACTGGCTCATTAATAAGGCCAAGTCCGCTATCGACCAGCTAGATGAGCTTCCACCGTGGAAACCCACCGTCGCAGTAGTTGAAAATGTTCAAAACGACGACGACGCAGCAGAGAACGAAACGACGACGCTCCGTGATGAACAAGTGGGAACTGGTTTTCTTCCGTTGGAGACTGATACTGATATCGCTGATACTATTAGGTCTTTCTTTCCGACTACAACGACGTCGTCGCCGATTCAGTTTCATAACTACCCGCCGGATTTGCTTTCCAGAACGAGCAGCCAGGACCTAAGGCTCTCGCTTCACCAGGCCCAGGCCCAGGCCCAAGCCCAAGCCCAGCACGGGCTTTTCAACGGAACCGCTACGCTTGGGTTTGATGGAATGGTAGCTTGGAATGCTGCTGATACTGGTAATGGTAATGGTAATGGTAATGGTGGTGGTGGGTTTGTCTTCAACGCCGCTCCTTTTCCGTCGCCGTCGGTGTTGCCGGCGGTGATTGGCCATGGCCAGTATGTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACTCCTTCGATTCGTGCTTGGATTGACGCGCCGTCATCGTCGTCGTCGTTCGTCGCCGATCATCGTTATCATCATCCTCATCAGTATCTTTCGCCGGCGATGATGGTGCGTCAGTCTTCTTCTTCTTCGGCTGCGTCGGGGATCGGATTCGCCTCAGGCGGCTTCTCCGGTTTCCGCGTGCCGGCACGGATTCGGGGTGAGGAGGAGCACGACGGCGTTTCTGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCGTTGA 1011 0.5589 MRGGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDQLDELPPWKPTVAVVENVQNDDDAAENETTTLRDEQVGTGFLPLETDTDIADTIRSFFPTTTTSSPIQFHNYPPDLLSRTSSQDLRLSLHQAQAQAQAQAQHGLFNGTATLGFDGMVAWNAADTGNGNGNGNGGGGFVFNAAPFPSPSVLPAVIGHGQYVSQRGPLQSSNTPSIRAWIDAPSSSSSFVADHRYHHPHQYLSPAMMVRQSSSSSAASGIGFASGGFSGFRVPARIRGEEEHDGVSDKPSSASSDSRR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4947g00005 336 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 250 IPR005333 GO:0003700
Gabi4947g00005 336 Coils Coil 95 115 - -
Gabi4947g00005 336 MobiDBLite consensus disorder prediction 1 31 - -
Gabi4947g00005 336 MobiDBLite consensus disorder prediction 311 336 - -
Gabi4947g00005 336 Pfam TCP family transcription factor 23 126 IPR017887 -
Gabi4947g00005 336 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Gabi4947g00005 336 MobiDBLite consensus disorder prediction 312 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4947g00005 Gabi-Chr4947 52812 54777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4947g00005 5 335 TCP Transcription Factor Family AT3G15030 47.942 1.27e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gabi4947g00005 TCP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4947g00005 - - vum:124829805 332.798