Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4942g00002 ATGGGTTTATCTTCATTGCATGTCTGCATGGAATCATCAGATCATTGGTTGCAGGGCACAATTCACGAGGATTCAGGAATGGATTCTTCATCACCATCTGGAGACATGCTTACATGCTCAAGGCCACTGATAGAGAGAAGGCTAAGACCACCTCATGACCAAGCTCTAAAGTGTCCAAGGTGTGATTCAACCCACACCAAATTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGCAGAAGGTACTGGACCAAAGGAGGCACTCTTAGGAACATCCCTGTTGGTGGAGGTTGCAGAAAGAACAAGAAAGTTTCTACCAAGAAATCCAATGACCAATTACCTAATAATCAAAACCAAGCTCAACAACCAGGTCCCTCCTACCATCACAACCCCAAAGATCTTCAACTTTCTTTCCCAGATATGCAATTTTCCCACCTCAGTAACTTACTTGGGAGTAATGCTGGAGCATTGGGAAACCCTAATTTCATGGATAACAAGTATAACATTGGTATGTTCGAGAACCATCCTAGGCCTATTGACTTCATGGAAAATAAGTTGGAAGGCATAATTGGGAGTAGTTCTAGGAATTTTGATTTTTTTGGAAATAGTGATATGGGTATGGCTGTTGGGTTGGGAGACATGAATGGTACTACTCAAAATGGAATGTCACCAAATTTTCACAATCTTTGTTCTCCTGCATTTGGTGGCATGTCCCTTGATCATGGTAACAATATAATTAATAATGGGGCTTACTTAATGGACTCTTGCCAGAGGCTAATGCTGCCATATGATGCTAAGGAGGACCATAATGCCTCAATTGATGATGTGAAACCAAACCCTAAACTATTGTCCCTTGAATGGCAAGACCAGGGTTGCTCTGATGCTGGAAAAGAATCATTTGGGTATCTGAACGGTCCAGGATCATGGACTGGCATGATGAACGGCTATGGATCTTCCACAACAAATCCTTTGGTCTAA 999 0.4234 MGLSSLHVCMESSDHWLQGTIHEDSGMDSSSPSGDMLTCSRPLIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKSNDQLPNNQNQAQQPGPSYHHNPKDLQLSFPDMQFSHLSNLLGSNAGALGNPNFMDNKYNIGMFENHPRPIDFMENKLEGIIGSSSRNFDFFGNSDMGMAVGLGDMNGTTQNGMSPNFHNLCSPAFGGMSLDHGNNIINNGAYLMDSCQRLMLPYDAKEDHNASIDDVKPNPKLLSLEWQDQGCSDAGKESFGYLNGPGSWTGMMNGYGSSTTNPLV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4942g00002 332 MobiDBLite consensus disorder prediction 101 141 - -
Gabi4942g00002 332 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Gabi4942g00002 332 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Gabi4942g00002 332 MobiDBLite consensus disorder prediction 115 135 - -
Gabi4942g00002 332 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 45 192 IPR045174 GO:0003700|GO:0006355
Gabi4942g00002 332 Pfam Dof domain, zinc finger 53 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4942g00002 Gabi-Chr4942 10680 12154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4942g00002 1 332 C2C2-Dof Transcription Factor Family AT5G62940 41.000 8.47e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi4942g00002 zf-Dof 1.7e-33 No_clan