Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4934g00002 ATGGTGGGAAGAAGAGTGCGTTTATCTATAGAAGCTAGAAATGGGTTAGAATTTTTGAAGCGTAAAAGACTTCAGCGAAAAGAATCTGCCACTGAGACTAGCATTGCTAACATGATGAACAGAAGTGGAGGAGATTCTCTAAGAGCTTCAGCAGCATGTGGAATGAGATTGCATCATAATGCAGATATCTTTTCCAAGAGGAAGGTAGATAAGTTTGACACAAGTGATCTAGAATGGACTGAGAAAATTCCAGATTGTCCTGTGTACTATCCAACAAAAGAGGAATTCGAGGATCCCTTGGTTTATTTGCAGAGGATAGCTCCTGAAGCTTCTAAATATGGTATATGCAAGATTATTTCACCTTTACATGCTTCTGTTCCTGCTGGGGTTGTTTTAATGAGGGAGGAAACCGGATTCAAGTTTACAACTAGAGTGCAGCCCCTTCGCCTTGCTGAATGGGATACTGAAGACAAAATCACTTTTTTCATGAGTGGAAGAAATTATACATTTCGTGATTTTGAAAAGATGGCAAACAAGGTTTTTGTGCAAAGATATTGCAGTGCTGGATGTCTTTCTGCCACATACTTGGAAAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCTTGTGATGTTGATGGCAGTGCCTTTTCATCTTCGCCTACCGATCAGCTTGGGACAAGCAAATGCAATTTGAAGAAACTTTCATGGTTGCCCAAGTCTATTTTGCGGCTATTGGAGACATCAATACCGGGAGTAACAGAACCCATGCTATACATTGGGATGCTGTTTAGCATGTTTGCTTGGCATGTGGAGGATCATTATTTGTACAGCATTAATTACCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTCAGAGAACACGTGTATACTAATGATATTTTGTCAAGTGACGGGGAAGATGGAGCATTCGATGTTCTACTGGGGAAAACAACTCTGTTTCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCGGGGGAGTTTATAATAACCTTCCCCAGAGCATATCATGCCGGCTTTAGTCATGGTTTCAACTGTGGAGAAGCAGTTAACTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTTCTAGCCAGAGATATGCACTTCTTAACAGGGTTCCTTTGCTGCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTCTATGCAAGTTTAGAACTTGAAGAGCCAGACTTTCCCTCTGAAGACTTGTTATCTCATTATTACGTTCGGATTTCATTTGTTAATTTGATGCGCTTTCAGCATTGTGCTCGTTGGCTCTTAATGAAATCAAGGGTGTATTTAAGGGTTTCTTCACATTCCCATGGTACAATTTTCTGTAGCCTCTGCAAACGCGACTGTTATGTAGCTTATGTTGGCTGTGACTGTCACAAGCATCCAGTATGCCTTCGCCATGATATTGAATCTCTTGACTTCCCCTGTGGGAGCAAACACACGCTTTATGTGAGGGAAGATGTTTCAGATATGGAAGCTGCAGCCAAGAGATTTGAGCAGCAGGATGGGATATGGAATGAGATACTTCAGCAGACCAAAAGTGACAAAAACATGTATTCATATCCTTTATCAAATATGTTCCAGAAGGCTGAGGCAAATGGATATACACCTTATTGTGAGACGAAATGTGATTATGTTACTGATTTTTATACAACCCCAGAGCAGTCAACAAATAATGAAGAGCGTGTTACACAAAGTCAATTTGTTTCAAGACATTGCTTTGAAAATCTTAAACCCAAAGTGTCTGTGGTTTCTTTTTCTTCTGCTGCATCTGCCCTTTGTTCTCTATCAGAACCTCTTGTGATCTCCTCTGCTCCCAATAACGATGAGGGGCGTGCCAACTTTAAATTAGGCATTACTGATTTTGAAGAGACTAGTGAAAGAATATCCAACAGTGCTTCTGAATCTTTGCTACCTGCTCAATATCATGAAATCCCAAATAAATCTAAGGGCAATCTTCATAAATTTGACACGAAGATCATTGTAGATAATGATAGTGATGATTCTGATCCAGGGATATTTAGGGTAAAGCGCCCTTCTTCTCTGAGGGCTGAGAGGAGAAAACATTCTGAGCAGCAGGGACTCAAACCTTTGAAAAAAGTCAATCGTGAAGGAAGTAGGCACACGGTGGATTTCAGGAAAACCAAGGAATCAAGTTACAAATACACTCATTGTGTTAGTCATAAAGTTAATGGTGACATTTCCTTGAGGAACAGATTTGCAAGGGGAAATAGCATTCCCATATCTATGAGGTATAAGAAGTCAAATAATAATGAGGAAGTGAATATACAAGGGGAACACCACCGGAGAGATAGGTTGCAGCAGATAAATACGGAACCGCCTTCCATAGAGAATGTTCCAAAGCGCCCGAAAGTCCGAGGCCCTTCAGTCCTGGGCTTATAG 2526 0.4078 MVGRRVRLSIEARNGLEFLKRKRLQRKESATETSIANMMNRSGGDSLRASAACGMRLHHNADIFSKRKVDKFDTSDLEWTEKIPDCPVYYPTKEEFEDPLVYLQRIAPEASKYGICKIISPLHASVPAGVVLMREETGFKFTTRVQPLRLAEWDTEDKITFFMSGRNYTFRDFEKMANKVFVQRYCSAGCLSATYLEKEFWNEIGCGKMETVEYACDVDGSAFSSSPTDQLGTSKCNLKKLSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQNPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAISSQRYALLNRVPLLPHEELLCKEAMLLYASLELEEPDFPSEDLLSHYYVRISFVNLMRFQHCARWLLMKSRVYLRVSSHSHGTIFCSLCKRDCYVAYVGCDCHKHPVCLRHDIESLDFPCGSKHTLYVREDVSDMEAAAKRFEQQDGIWNEILQQTKSDKNMYSYPLSNMFQKAEANGYTPYCETKCDYVTDFYTTPEQSTNNEERVTQSQFVSRHCFENLKPKVSVVSFSSAASALCSLSEPLVISSAPNNDEGRANFKLGITDFEETSERISNSASESLLPAQYHEIPNKSKGNLHKFDTKIIVDNDSDDSDPGIFRVKRPSSLRAERRKHSEQQGLKPLKKVNREGSRHTVDFRKTKESSYKYTHCVSHKVNGDISLRNRFARGNSIPISMRYKKSNNNEEVNIQGEHHRRDRLQQINTEPPSIENVPKRPKVRGPSVLGL 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4934g00002 841 SMART JmjN_1 85 126 IPR003349 -
Gabi4934g00002 841 Gene3D Cupin 86 438 - -
Gabi4934g00002 841 Pfam C5HC2 zinc finger 483 534 IPR004198 -
Gabi4934g00002 841 PANTHER LYSINE-SPECIFIC DEMETHYLASE 78 742 - -
Gabi4934g00002 841 FunFam Lysine-specific demethylase isoform A 81 430 - -
Gabi4934g00002 841 ProSiteProfiles JmjC domain profile. 233 403 IPR003347 -
Gabi4934g00002 841 SMART cupin_9 230 403 IPR003347 -
Gabi4934g00002 841 ProSiteProfiles JmjN domain profile. 86 127 IPR003349 -
Gabi4934g00002 841 Pfam JmjC domain, hydroxylase 263 386 IPR003347 -
Gabi4934g00002 841 Pfam jmjN domain 87 119 IPR003349 -
Gabi4934g00002 841 MobiDBLite consensus disorder prediction 806 841 - -
Gabi4934g00002 841 SUPERFAMILY Clavaminate synthase-like 164 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4934g00002 Gabi-Chr4934 7895 20631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4934g00002 80 428 JUMONJI Transcription Factor Family AT2G34880 36.275 4.18e-61 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi4934g00002 JmjC 2.3e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4934g00002 - - gmx:100798611 1313.13