Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi492g00006 ATGGAATGGCCTACATTCAAGTGGTTCACCACAGTGTGCCAATGTCTGGAAGGGTTCAAGCCTACGTCACCTCAAGCATGGTACTCAATGGACTGGTCTCAAGGATGTGTCCGCAATAAGCCATTAAGTTGCAAGGACAAGCGTAAAGATGGATTTATCAAATTGAGTGGCCTTAAAGCGCCTGATACTACACATACTTGGCTGGATCAAACAATTGGTTTAGAGGAATGCAGAACCAAGTGTTTGGATAACTGTTCTTGTATGGCATATGCAAATTCAGATGTCAGTGGACAAGGGAGTGGCTGTGCCATGTGGTTTGGCAATCTAATTGACATGAGACAGTTTGCATCTGGAGGACAGGACCTATATCTTCGAATGGATGCTTCAGAATTAGAACATGTCAGTCATGGCCACAAGAAGGAGGGAGTCCTAGTTGCTGTGACAGTTTCTCTGGCCGTGGCAGCAGTTTCTGGTATACTCATACTTGGTTGGTGTTATAGACAAAAGTCACGCTCCAATGTAAAAGAGAAATTAGACTTCAATATCAAAGAAGAACAAAACAGTAGAATGCAAGTGGATGATATGGATCTACCAGTCTTTGACTTGTCAACAATTGCTAAGGCCACTAGCAACTTTACAATCAAGAACAAAATTGGCGAAGGAGGTTTTGGACCTGTATACAGGGGAACTCTAGCAGATGGACTGGAAATTGCTGTGAAGAGGCTTTCTACAAGCTCAGGACAAGGATTGACTGAGTTCAAGAATGAAGTAAAATTGATTGCAAAACTTCAACACCGCAATCTTGTAAAGCTTCTTGGATGTTGCCTTGAAGAAGAAGAAAAAATGCTGGTTTATGAATACATGCCTAACAGTAGCCTTGATTCCTTTATTTTTGATCAACATAGAAGTGGATTACTTGACTGGTCAAAGCGCTTCCACATTATATGTGGAATTGCCAAGGGCCTTCTCTATCTTCATCAAGATTCCAGACTCAGGATTATTCACAGAGATCTCAAAGCAAGTAATGTTTTACTTGATAGTGAGTTGAATCCAAAAATTTCAGATTTTGGCATGGCTAGAATTTTTGGAACAGATCAGAAAGAAGGAAACACAAGGAGAATAGTGGGGACTTATGGTTACATGGCACCAGAATATGCAACTGATGGGCTATTTTCAGTAAAATCTGATGTTTTCAGCTTTGGAGTTTTGTTGCTAGAGATCATATCTGGGAAGAGAAGTAGAGGATATTATAGTCAGAACCACAACCATAATCTCATTGGCCATGCATGGAAACTCTGGAAAGAAGGAAGACCACTAGAACTGTCTGATACAAGCCTAGAAGACTCTTGTTTTCTATCACAAATATTGCATTGTTTTCATGTTAGTCTCTTGTGTGTTCAGCAGCATCCAGAGGATAGGCCTGGAATGTCATGTGTGATCCTAATGTTAGCTAGTGAGTTTGAATTGCCTGAGCCCAAACAGCCAGGATTCTTTGGAAAAGATTCGGGAGAAGCAGATTCCTCCACAAGTAAGCAGCAACTGAGTTCAACAAATGAAATAACCATTACCCTCTTAGAAGCCCGATGA 1587 0.4102 MEWPTFKWFTTVCQCLEGFKPTSPQAWYSMDWSQGCVRNKPLSCKDKRKDGFIKLSGLKAPDTTHTWLDQTIGLEECRTKCLDNCSCMAYANSDVSGQGSGCAMWFGNLIDMRQFASGGQDLYLRMDASELEHVSHGHKKEGVLVAVTVSLAVAAVSGILILGWCYRQKSRSNVKEKLDFNIKEEQNSRMQVDDMDLPVFDLSTIAKATSNFTIKNKIGEGGFGPVYRGTLADGLEIAVKRLSTSSGQGLTEFKNEVKLIAKLQHRNLVKLLGCCLEEEEKMLVYEYMPNSSLDSFIFDQHRSGLLDWSKRFHIICGIAKGLLYLHQDSRLRIIHRDLKASNVLLDSELNPKISDFGMARIFGTDQKEGNTRRIVGTYGYMAPEYATDGLFSVKSDVFSFGVLLLEIISGKRSRGYYSQNHNHNLIGHAWKLWKEGRPLELSDTSLEDSCFLSQILHCFHVSLLCVQQHPEDRPGMSCVILMLASEFELPEPKQPGFFGKDSGEADSSTSKQQLSSTNEITITLLEAR 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi492g00006 528 Gene3D Phosphorylase Kinase; domain 1 162 287 - -
Gabi492g00006 528 MobiDBLite consensus disorder prediction 492 528 - -
Gabi492g00006 528 ProSiteProfiles PAN/Apple domain profile. 44 127 IPR003609 -
Gabi492g00006 528 Pfam Domain of unknown function (DUF3403) 487 528 IPR021820 GO:0004674
Gabi492g00006 528 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 175 287 - -
Gabi492g00006 528 CDD STKc_IRAK 218 483 - -
Gabi492g00006 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 333 345 IPR008271 GO:0004672|GO:0006468
Gabi492g00006 528 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 288 491 - -
Gabi492g00006 528 ProSiteProfiles Protein kinase domain profile. 212 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi492g00006 528 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 508 - -
Gabi492g00006 528 MobiDBLite consensus disorder prediction 503 528 - -
Gabi492g00006 528 SUPERFAMILY Protein kinase-like (PK-like) 194 483 IPR011009 -
Gabi492g00006 528 SMART ntp_6 47 126 IPR003609 -
Gabi492g00006 528 Pfam Protein tyrosine and serine/threonine kinase 213 479 IPR001245 GO:0004672|GO:0006468
Gabi492g00006 528 SMART serkin_6 212 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi492g00006 528 Pfam PAN-like domain 44 112 IPR003609 -
Gabi492g00006 528 CDD PAN_AP_plant 41 125 - -
Gabi492g00006 528 Gene3D Transferase(Phosphotransferase) domain 1 288 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi492g00006 Gabi-Chr492 146191 149011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi492g00006 143 497 Receptor kinase-like Gene Family AT4G23230 53.371 3.98e-134 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi492g00006 PK_Tyr_Ser-Thr 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi492g00006 - - gmx:100778155 892.493