Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi492g00005 ATGTCTTTCATGAGAATCATTTTCCTTGCTTTTCATATACTTGCCCATCTTTCTGAAATTTCCTTAGCAGTTGACTCCATTTCTCAGTCCCTTTCCCTAAGTGATGATGGCAAAACCTTAGTTTCCAAAGGTGGAACCTTTGAACTAGGATTCTTCACCCCAGGAAATTCCCAGAAACGTTACCTGGGGATTTGGTACAAGAAAATCCCAATTCAAACAGTGGTTTGGGTTGCAAACCGGGTCAACCCAATCAATGATTCATCTGGAATCTTAAGATTAAACATCAGTGGGAACCTTGTCCTCACCCAGAATGACACTGTTGTTTGGTCTACTACAACAACATCTCTGAGAAAACCAGTGAGTCCTGTAGCCATGCTCTTAGATTCTGGCAATCTTGTGGTAAGAGATGAGAAAGAAGCAAAGACTGAAGCATACTTGTGGCAGAGCTTTGATTATCCAACTGATACTTTCTTACCAGATATGAAGTTTGGTTGGGATTTGAGAACTGGTCTTAATAGGAATATAACAGCTTGGAAGAGTCCTGATGATCCATCTCCTGGAGATTTCTCTTTTGGTATGGTGCTAAATAACTATCCTGATGCATATATGATGAAGGGTAACAAAAAGTTCTACCGAAGTGGACCATGGAATGGCCTACATTCAAGTGGTTCACCACAGGTAAGGGACAACCCCATTTATGACTACAAGTTTGTTTTCAATAAGGATGAACTTTACTACACATATACCCTCAAGAACTCATCTATGATCTCAAGATTAGTATTGAATGGAACAAACTATGTTCGTAGACGGTATGTGTGGATTGAATTAACACAAAGATGGGAGGTTTACACATCAGTGCCATTGGACTTATGTGACACTTATGCCCTTTGTGGAGCTTATGCAAATTGTGTTATTTCTGATTCACCAGTGTGCCAATGTCTGGAAGGGTTCAAGCCTACGTCACCTCAAGCATGGTACTCAATGGACTGGTCTCAAGGATGTGTCCGCAATAAGCCATTAAGTTGCAAGGACAAGCGTAAAGATGGATTTATCAAATTGAGTGGCCTTAAAGCGCCTGATACTACACATACTTGGCTGGATCAAACAATTGGTTTAGAGGAATGCAGAACCAAGTGTTTGGATAACTGTTCTTGTATGGCATATGCAAATTCAGATGTCAGTGGACAAGGGAGTGGCTGTGCCATGTGGTTTGGCAATCTAATTGACATGAGACAGTTTGCATCTGGAGGACAGGACCTATATCTTCGAATGGATGCTTCAGAATTAGAACATGTCAGTCATGGCCACAAGAAGGAGGGAGTCCTAGTTGCTGTGACAGTTTCTCTGGCCGTGGCAGCAGTTTCTGGTATACTCATACTTGGTTGGTGTTATAGACAAAAGTCACGCTCCAATGTAAAAGAGAAATTAGACTTCAATATCAAAGAAGAACAAAACAGTAGAATGCAAGTGGATGATATGGATCTACCAGTCTTTGACTTGTCAACAATTGCTAAGGCCACTAGCAACTTTACAATCAAGAACAAAATTGGCGAAGGAGGTTTTGGACCTGTATACAGGGGAACTCTAGCAGATGGACTGGAAATTGCTGTGAAGAGGCTTTCTACAAGCTCAGGACAAGGATTGACTGAGTTCAAGAATGAAGTAAAATTGATTGCAAAACTTCAACACCGCAATCTTGTAAAGCTTCTTGGATGTTGCCTTGAAGAAGAAGAAAAAATGCTGGTTTATGAATACATGCCTAACAGTAGCCTTGATTCCTTTATTTTTGATCAACATAGAAGTGGATTACTTGACTGGTCAAAGCGCTTCCACATTATATGTGGAATTGCCAAGGGCCTTCTCTATCTTCATCAAGATTCCAGACTCAGGATTATTCACAGAGATCTCAAAGCAAGTAATGTTTTACTTGATAGTGAGTTGAATCCAAAAATTTCAGATTTTGGCATGGCTAGAATTTTTGGAACAGATCAGAAAGAAGGAAACACAAGGAGAATAGTGGGGACTTATGGTTACATGGCACCAGAATATGCAACTGATGGGCTATTTTCAGTAAAATCTGATGTTTTCAGCTTTGGAGTTTTGTTGCTAGAGATCATATCTGGGAAGAGAAGTAGAGGATATTATAGTCAGAACCACAACCATAATCTCATTGGCCATGCATGGAAACTCTGGAAAGAAGGAAGACCACTAGAACTGTCTGATACAAGCCTAGAAGACTCTTGTTTTCTATCACAAATATTGCATTGTTTTCATGTTAGTCTCTTGTGTGTTCAGCAGCATCCAGAGGATAGGCCTGGAATGTCATGTGTGATCCTAATGTTAGCTAGTGAGTTTGAATTGCCTGAGCCCAAACAGCCAGGATTCTTTGGAAAAGATTCGGGAGAAGCAGATTCCTCCACAAGTAAGCAGCAACTGAGTTCAACAAATGAAATAACCATTACCCTCTTAGAAGCCCGATGA 2481 0.4051 MSFMRIIFLAFHILAHLSEISLAVDSISQSLSLSDDGKTLVSKGGTFELGFFTPGNSQKRYLGIWYKKIPIQTVVWVANRVNPINDSSGILRLNISGNLVLTQNDTVVWSTTTTSLRKPVSPVAMLLDSGNLVVRDEKEAKTEAYLWQSFDYPTDTFLPDMKFGWDLRTGLNRNITAWKSPDDPSPGDFSFGMVLNNYPDAYMMKGNKKFYRSGPWNGLHSSGSPQVRDNPIYDYKFVFNKDELYYTYTLKNSSMISRLVLNGTNYVRRRYVWIELTQRWEVYTSVPLDLCDTYALCGAYANCVISDSPVCQCLEGFKPTSPQAWYSMDWSQGCVRNKPLSCKDKRKDGFIKLSGLKAPDTTHTWLDQTIGLEECRTKCLDNCSCMAYANSDVSGQGSGCAMWFGNLIDMRQFASGGQDLYLRMDASELEHVSHGHKKEGVLVAVTVSLAVAAVSGILILGWCYRQKSRSNVKEKLDFNIKEEQNSRMQVDDMDLPVFDLSTIAKATSNFTIKNKIGEGGFGPVYRGTLADGLEIAVKRLSTSSGQGLTEFKNEVKLIAKLQHRNLVKLLGCCLEEEEKMLVYEYMPNSSLDSFIFDQHRSGLLDWSKRFHIICGIAKGLLYLHQDSRLRIIHRDLKASNVLLDSELNPKISDFGMARIFGTDQKEGNTRRIVGTYGYMAPEYATDGLFSVKSDVFSFGVLLLEIISGKRSRGYYSQNHNHNLIGHAWKLWKEGRPLELSDTSLEDSCFLSQILHCFHVSLLCVQQHPEDRPGMSCVILMLASEFELPEPKQPGFFGKDSGEADSSTSKQQLSSTNEITITLLEAR 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi492g00005 826 PIRSF SRK 1 826 IPR024171 GO:0004674
Gabi492g00005 826 CDD B_lectin 30 153 IPR001480 -
Gabi492g00005 826 MobiDBLite consensus disorder prediction 790 826 - -
Gabi492g00005 826 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Gabi492g00005 826 Pfam Domain of unknown function (DUF3403) 785 826 IPR021820 GO:0004674
Gabi492g00005 826 MobiDBLite consensus disorder prediction 801 826 - -
Gabi492g00005 826 SMART serkin_6 510 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi492g00005 826 Pfam PAN-like domain 342 410 IPR003609 -
Gabi492g00005 826 CDD PAN_AP_plant 339 423 - -
Gabi492g00005 826 SMART blect_4 31 153 IPR001480 -
Gabi492g00005 826 Pfam Protein tyrosine and serine/threonine kinase 511 777 IPR001245 GO:0004672|GO:0006468
Gabi492g00005 826 Gene3D - 20 150 IPR036426 -
Gabi492g00005 826 ProSiteProfiles Protein kinase domain profile. 510 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi492g00005 826 Pfam D-mannose binding lectin 73 179 IPR001480 -
Gabi492g00005 826 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Gabi492g00005 826 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Gabi492g00005 826 Gene3D Transferase(Phosphotransferase) domain 1 586 789 - -
Gabi492g00005 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 789 - -
Gabi492g00005 826 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 771 - -
Gabi492g00005 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Gabi492g00005 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 585 - -
Gabi492g00005 826 SUPERFAMILY Protein kinase-like (PK-like) 492 781 IPR011009 -
Gabi492g00005 826 SMART ntp_6 345 424 IPR003609 -
Gabi492g00005 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 150 - -
Gabi492g00005 826 Gene3D Phosphorylase Kinase; domain 1 469 585 - -
Gabi492g00005 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Gabi492g00005 826 CDD STKc_IRAK 516 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi492g00005 Gabi-Chr492 146191 149995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi492g00005 441 795 Receptor kinase-like Gene Family AT4G23230 53.371 5.09e-130 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi492g00005 PK_Tyr_Ser-Thr 6.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi492g00005 - - gmx:100778155 1412.13