Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi492g00002 ATGGCAGATGATCAATTTCAAGCAAGTGGAAACTGGTGGGATTCAGCAAGAAACGTGAGGTTTGAAAGTGGGGCATCACAGTCTTCTTCCTCTGCCATCACAAACATTGGAAACTTTGCTTGGCAAAACCAAGATATGGAAGACATGAAGCCAAGGTCTTCCATTGATTCCTTGTCTGTCTCAGGTAGTTCTTCTGTGGTTTTCCATGACAACCAGAAGCTTCAAACTCCAGATTCTGCCACTGACCCCAACTTGCATATGATGATGGGTTTAGGCCTTTCATCTCATGCCATGGATTGGAATCAAGCATCATTGCTAAGAGGTGAGAAGGGTACAGAGAACAGTTTCAGGTCGATGCTGCAAGAGAATTTGAGCTCATCAAGAACAAATTTTCAGCAAGAAACTGAGATGGGGTTGTCTCAAGTTCAATGGAGGTCAGAGAAGTTGTTCTCTACAGAGTCTCCAACGAATGAATTCAAGCAAGTAAATAGGGGTTTCTCTTTAGAACAAAACCAGTTTAGTCCTCAATATAGTTCTGGGGACAGCACTGTTACAAGCCAAGGTTTGTCCTCTACTTTTCCAATGGATTCCTCAGCAGCTTTATATGGGAACACATCAATATTACAAGGACTATTAGGACCTGATCACAATAATCATCAACCCCATCAAGCTTCCTTTGATAATCGCCCCATGAGTACTTTTCAATGCCCAACAAGCTATGGATTAAACTCTAATGAGTTGATTCATTCATGGTCTAAACCTCCTCAATTCTTGAGAGCTTCACCTCCAAAACAAATACCAAATAACCAGTTGCATTTCACCAACAACGCTCCCTTTTGGAACAACTCTGATGCTGCTTCCATCAAAGATGTTCGGTCCAGCTTCTTCCCTTCATTGCAACCCCAATTCTCCACTCCAAATTTTGATGCACAGTCAAAGAATATATCTGAAGTTAGGGAGTCAAGTGCTGTGGCAAGGAAAAGTGGGAGTGAGCCAACACCCAAAAGGCCTCGTAACGAAACCCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTAGTGTCGCCTTTCGGAAAGACTGATACAGCCTCAGTGCTATCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAGGTCACTGTTTTAAGCACCCCGTATATGAAAAGTGGAGCACCAATACAGACACAACAGAGTTCTGGTAAATCAAAGGAAGCTGAGGGTCCAAAGCAAGATCTTAGAAGCCGAGGGCTATGCTTGGTGCCAGTTTCGAGTACATTTCCAGTGACTCATGAAACCACAGTTGATTTTTGGACACCAACATATGGAGGGTCTTCCAGATAA 1380 0.4312 MADDQFQASGNWWDSARNVRFESGASQSSSSAITNIGNFAWQNQDMEDMKPRSSIDSLSVSGSSSVVFHDNQKLQTPDSATDPNLHMMMGLGLSSHAMDWNQASLLRGEKGTENSFRSMLQENLSSSRTNFQQETEMGLSQVQWRSEKLFSTESPTNEFKQVNRGFSLEQNQFSPQYSSGDSTVTSQGLSSTFPMDSSAALYGNTSILQGLLGPDHNNHQPHQASFDNRPMSTFQCPTSYGLNSNELIHSWSKPPQFLRASPPKQIPNNQLHFTNNAPFWNNSDAASIKDVRSSFFPSLQPQFSTPNFDAQSKNISEVRESSAVARKSGSEPTPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQTQQSSGKSKEAEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTYGGSSR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi492g00002 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 388 IPR011598 GO:0046983
Gabi492g00002 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 404 IPR036638 GO:0046983
Gabi492g00002 459 SMART finulus 350 394 IPR011598 GO:0046983
Gabi492g00002 459 MobiDBLite consensus disorder prediction 302 347 - -
Gabi492g00002 459 Gene3D - 349 410 IPR036638 GO:0046983
Gabi492g00002 459 CDD bHLH_AtbHLH_like 345 396 IPR045239 -
Gabi492g00002 459 MobiDBLite consensus disorder prediction 403 427 - -
Gabi492g00002 459 FunFam Transcription factor bHLH123 family 349 411 - -
Gabi492g00002 459 MobiDBLite consensus disorder prediction 302 328 - -
Gabi492g00002 459 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 151 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi492g00002 Gabi-Chr492 104565 107344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi492g00002 107 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.118 2.23e-76 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi492g00002 - - gmx:100778697 696.812